PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_46629 | ||||||||
Common Name | KK1_048807 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | LBD | ||||||||
Protein Properties | Length: 99aa MW: 10883.5 Da PI: 6.7896 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 57.5 | 3.9e-18 | 4 | 74 | 29 | 100 |
DUF260 29 kfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +a++ lF+ +n+ +ll++l+ +red+++sl+yeAear+ dP+yG+vg+i+ lq++l+ql++el+++k+e C.cajan_46629 4 PYAILPNLFSSANL-NLLNELNAAQREDTVKSLAYEAEARLWDPMYGCVGLISILQHRLKQLQTELNHAKSE 74 56777889998885.89**************************************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 11.157 | 1 | 75 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.3E-16 | 5 | 72 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 99 aa Download sequence Send to blast |
EKKPYAILPN LFSSANLNLL NELNAAQRED TVKSLAYEAE ARLWDPMYGC VGLISILQHR 60 LKQLQTELNH AKSELASDIG PHALLPPTPS PPPPPPPKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-20 | 1 | 75 | 36 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-20 | 1 | 75 | 36 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_46629 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029126320.1 | 8e-66 | LOB domain-containing protein 18 | ||||
Swissprot | Q9FKZ3 | 2e-28 | LBD36_ARATH; LOB domain-containing protein 36 | ||||
TrEMBL | A0A151UDL2 | 3e-64 | A0A151UDL2_CAJCA; LOB domain-containing protein 36 (Fragment) | ||||
STRING | XP_007136211.1 | 1e-35 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 4e-23 | ASYMMETRIC LEAVES 2-like 1 |
Publications ? help Back to Top | |||
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