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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_46240 | ||||||||
Common Name | KK1_049116 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | B3 | ||||||||
Protein Properties | Length: 198aa MW: 22592.2 Da PI: 10.1845 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.6 | 8.1e-17 | 92 | 180 | 2 | 97 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 f+ +++ + l +p++f +++ + +++ ++le ++grsW v + + + + +GW++F+++n+Lk+gD++vF+l+++ ++ +++v + C.cajan_46240 92 FTLVMKPTYIIGYYLDIPREFSKQYLK--RTHAVVILEVLDGRSWPVIY--SAPR----INGGWQKFASENNLKVGDVCVFELIQKiQGLTFKVFI 179 4455555555555699******99963..45678***************..4444....99***********************987888666665 PP E CS B3 97 f 97 f C.cajan_46240 180 F 180 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-22 | 84 | 180 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.65E-23 | 85 | 181 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.05E-22 | 90 | 181 | No hit | No description |
PROSITE profile | PS50863 | 13.606 | 91 | 183 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-10 | 91 | 181 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.6E-15 | 92 | 180 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MTIVKSTLSS PPPCKKMKNS ITTNVERSTN GVNLHRRIQT RSTSSQKTKF IKQELDEDES 60 KGVFNTECTK VEQLTSTALT KATAFRSEQP FFTLVMKPTY IIGYYLDIPR EFSKQYLKRT 120 HAVVILEVLD GRSWPVIYSA PRINGGWQKF ASENNLKVGD VCVFELIQKI QGLTFKVFIF 180 PAISQGNPLF HFICTMRI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_46240 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020209299.1 | 1e-131 | B3 domain-containing transcription factor VRN1 isoform X2 | ||||
TrEMBL | A0A151UHX6 | 1e-145 | A0A151UHX6_CAJCA; B3 domain-containing protein Os11g0197600 family | ||||
STRING | GLYMA09G18790.2 | 2e-82 | (Glycine max) | ||||
STRING | GLYMA09G20150.1 | 5e-81 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 2e-14 | related to vernalization1 1 |