PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_45905
Common NameKK1_047252
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ERF
Protein Properties Length: 300aa    MW: 33601.8 Da    PI: 5.887
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_45905genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.5e-20105154255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+W+AeIrdp     r  r++lg+++taeeAa  +++a+ +l+g
  C.cajan_45905 105 KYRGVRQRP-WGKWAAEIRDPL----RrVRIWLGTYDTAEEAALVYDHAAIRLRG 154
                    8********.**********72....45*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.0E-37105168IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-22105162IPR016177DNA-binding domain
CDDcd000181.16E-33105161No hitNo description
PROSITE profilePS5103223.736105162IPR001471AP2/ERF domain
PfamPF008475.5E-13105154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-30105161IPR001471AP2/ERF domain
PRINTSPR003676.4E-11106117IPR001471AP2/ERF domain
PRINTSPR003676.4E-11128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEHNNNSNLN LCKYTVHESI LKKHTKSKTA STSVGPKLIS ISLTDPYATD SSSDEDTHRP  60
RQRVKRYVSR IELQPPCRAA NPRKRPAVGT TSCRPPPKVS ASGVKYRGVR QRPWGKWAAE  120
IRDPLRRVRI WLGTYDTAEE AALVYDHAAI RLRGPDALTN FLSTPTKEEM QVVVKRETEA  180
SGYESSDECM HISSPTSVLR YGEEKKPEEP CAGASFSECG GETASFHESC EYLVQDMMPW  240
DDVFQFPALD EPLSHFETTP VLVGDGVIDF QEKFSASSTL CQVDDYFQDI LLASEPLVLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22101161162ATERF1
3gcc_A1e-22101161162ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_45905
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020208529.10.0ethylene-responsive transcription factor CRF3
SwissprotQ9SUE31e-52CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A151QP980.0A0A151QP98_CAJCA; Ethylene-responsive transcription factor CRF4
STRINGXP_007141007.11e-115(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-50cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]