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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_45422 | ||||||||
Common Name | KK1_045874 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 164aa MW: 17645.1 Da PI: 11.0793 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.8 | 1.4e-09 | 16 | 56 | 7 | 47 |
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ l++ + +++G+g+W++I+r + +Rt+ q+ s+ qky C.cajan_45422 16 WLNRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 56 67789999********************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.26E-11 | 17 | 62 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.8E-7 | 17 | 56 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 2.0E-12 | 17 | 59 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 1.14E-6 | 19 | 57 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-6 | 20 | 55 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MHPHAKHYLV LKFQIWLNRL FLLGLEKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL 60 NSMNKDRRRS SIHDITSVNN GDISAPQGPI TGQTNGSAGN STSKAAKQAT TASTGVPGVG 120 IYAAPTIGQP IGGPLVSAVG TPVNLPAPPH MAYGVRAPYQ GTLW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_45422 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235875 | 1e-169 | AC235875.2 Glycine max clone GM_WBb0144J22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020207814.1 | 9e-97 | transcription factor SRM1 isoform X1 | ||||
Refseq | XP_020207815.1 | 9e-97 | transcription factor SRM1 isoform X1 | ||||
Refseq | XP_020207816.1 | 9e-97 | transcription factor SRM1 isoform X1 | ||||
Refseq | XP_020207818.1 | 9e-97 | transcription factor SRM1 isoform X1 | ||||
Refseq | XP_020207819.1 | 9e-97 | transcription factor SRM1 isoform X2 | ||||
Swissprot | Q9FNN6 | 4e-60 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A151QSP1 | 1e-117 | A0A151QSP1_CAJCA; Myb-like protein J | ||||
STRING | XP_007153178.1 | 1e-89 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4694 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 2e-58 | MYB family protein |
Publications ? help Back to Top | |||
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