PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_44885
Common NameKK1_046789
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family NF-YC
Protein Properties Length: 190aa    MW: 20919.2 Da    PI: 4.8946
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_44885genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC45.22.1e-144784135
          NF-YC  1 qlksfwekq...iekatdfknhelPlarikkilkaded 35
                   ql++fw++q   ie+++dfknh+lPlarikki+kaded
  C.cajan_44885 47 QLQMFWSYQrqeIEHVNDFKNHQLPLARIKKIMKADED 84
                   89*****998899***********************98 PP
2NF-YC39.99.2e-138311669102
          NF-YC  69 nkrrtlkksdiaaavtrtdifdflvdivprdelk 102
                     +rrtl+k+diaaa+trtdifdflvdivprde+k
  C.cajan_44885  83 EDRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIK 116
                    579****************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.18E-1421106IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.8E-86184IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.6E-885112IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MENNQQQQQQ QQQQGGQGQG QGQSGGAYPG AGGAPPFQHL LQQQQQQLQM FWSYQRQEIE  60
HVNDFKNHQL PLARIKKIMK ADEDRRTLQK NDIAAAITRT DIFDFLVDIV PRDEIKDDAA  120
LVGATASGVP YYYPPIGQPA GMMIGRPAVD PATGVYVQPP SQAWQSVWQS AAEDASYATG  180
PAQGNLDGQR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18490RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_44885
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150353e-82AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020208285.17e-93nuclear transcription factor Y subunit C-1 isoform X2
RefseqXP_029126147.19e-93nuclear transcription factor Y subunit C-1 isoform X1
SwissprotQ9SMP04e-67NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLA0A151QQD21e-134A0A151QQD2_CAJCA; Nuclear transcription factor Y subunit C-1
STRINGGLYMA04G37291.15e-88(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110713038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.16e-67nuclear factor Y, subunit C1
Publications ? help Back to Top
  1. Shi H,Chan ZL
    AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway.
    Plant Signal Behav, 2015.
    [PMID:24831307]
  2. Shi H,Chan ZL
    AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway.
    Plant Signal Behav, 2014. 9(7): p. e29109
    [PMID:25763489]
  3. Tang Y, et al.
    Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
    Mol Plant, 2017. 10(2): p. 260-273
    [PMID:27876642]
  4. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]