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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_44862 | ||||||||
Common Name | KK1_044322 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | YABBY | ||||||||
Protein Properties | Length: 168aa MW: 18932.5 Da PI: 7.7104 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 189 | 2.3e-58 | 6 | 159 | 3 | 170 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 ++ ++e++Cy+ C+fC+ +lavsvP + l +vtvrCGhCt+l svn+a a q l+ ++ +e ++++++++ + ++++ +++++ C.cajan_44862 6 IDVAPEKLCYIPCSFCHIVLAVSVPCSNLCDIVTVRCGHCTNLWSVNMAAAFQSLSWQEV----------QESGHSNSQCRIDTGSTSKFCNKIQM 91 66789*******************************************999999988773..........44444444444444433333333333 PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + +v++ v+r Pekrqr+Psayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl C.cajan_44862 92 HA----PTVHVKEERVVNRTPEKRQRAPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 159 22....222333334589****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.6E-66 | 9 | 159 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.7E-8 | 101 | 152 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.0E-5 | 106 | 153 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MSSCSIDVAP EKLCYIPCSF CHIVLAVSVP CSNLCDIVTV RCGHCTNLWS VNMAAAFQSL 60 SWQEVQESGH SNSQCRIDTG STSKFCNKIQ MHAPTVHVKE ERVVNRTPEK RQRAPSAYNQ 120 FIKEEIQRIK ANNPDISHRE AFSTAAKNWA HFPHIHFGLM LESNNQDN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_44862 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020206883.1 | 1e-124 | axial regulator YABBY 5 | ||||
Swissprot | Q8GW46 | 1e-77 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A151QWM4 | 1e-122 | A0A151QWM4_CAJCA; Axial regulator YABBY 5 | ||||
STRING | GLYMA13G22620.1 | 1e-104 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 5e-80 | YABBY family protein |
Publications ? help Back to Top | |||
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