PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_44862
Common NameKK1_044322
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family YABBY
Protein Properties Length: 168aa    MW: 18932.5 Da    PI: 7.7104
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_44862genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY1892.3e-5861593170
          YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 
                    ++ ++e++Cy+ C+fC+ +lavsvP + l  +vtvrCGhCt+l svn+a a q l+ ++           +e ++++++++  + ++++  +++++
  C.cajan_44862   6 IDVAPEKLCYIPCSFCHIVLAVSVPCSNLCDIVTVRCGHCTNLWSVNMAAAFQSLSWQEV----------QESGHSNSQCRIDTGSTSKFCNKIQM 91 
                    66789*******************************************999999988773..........44444444444444433333333333 PP

          YABBY  99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                    +      + +v++   v+r Pekrqr+Psayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl
  C.cajan_44862  92 HA----PTVHVKEERVVNRTPEKRQRAPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 159
                    22....222333334589****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.6E-669159IPR006780YABBY protein
SuperFamilySSF470951.7E-8101152IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.0E-5106153IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MSSCSIDVAP EKLCYIPCSF CHIVLAVSVP CSNLCDIVTV RCGHCTNLWS VNMAAAFQSL  60
SWQEVQESGH SNSQCRIDTG STSKFCNKIQ MHAPTVHVKE ERVVNRTPEK RQRAPSAYNQ  120
FIKEEIQRIK ANNPDISHRE AFSTAAKNWA HFPHIHFGLM LESNNQDN
Functional Description ? help Back to Top
Source Description
UniProtPromotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_44862
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020206883.11e-124axial regulator YABBY 5
SwissprotQ8GW461e-77YAB5_ARATH; Axial regulator YABBY 5
TrEMBLA0A151QWM41e-122A0A151QWM4_CAJCA; Axial regulator YABBY 5
STRINGGLYMA13G22620.11e-104(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112434112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.25e-80YABBY family protein
Publications ? help Back to Top
  1. Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC
    The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity.
    Plant Cell, 2015. 27(12): p. 3321-35
    [PMID:26589551]