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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_44684 | ||||||||
Common Name | KK1_044411 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | HSF | ||||||||
Protein Properties | Length: 148aa MW: 16446.8 Da PI: 10.5055 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 66 | 8.3e-21 | 36 | 96 | 32 | 101 |
-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 32 deeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101 + efa+++LpkyFk +nf+SF RQLn+YgF+kv ++ weF+++ F++gk+ ll++i+r+k C.cajan_44684 36 ATAEFARDLLPKYFKYNNFSSFFRQLNTYGFRKVVPDR---------WEFANDCFRRGKRGLLRDIQRRK 96 5789********************************99.........*********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.5E-28 | 21 | 95 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 8.03E-19 | 24 | 95 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.0E-20 | 37 | 95 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 7.8E-18 | 37 | 95 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-9 | 44 | 56 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-9 | 57 | 69 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MAPLPAEQTG ESAPSESQRS IPTPFLTKAY QLHRLATAEF ARDLLPKYFK YNNFSSFFRQ 60 LNTYGFRKVV PDRWEFANDC FRRGKRGLLR DIQRRKILSV PAAATVTTAN AITVAMAAPA 120 VRTVSPTTSS DEQCTAPRVA PLPAAELL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-16 | 32 | 100 | 46 | 124 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_44684 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN896305 | 5e-74 | JN896305.1 Glycine max heat shock transcription factor HSFB2b mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017426020.1 | 2e-68 | PREDICTED: heat stress transcription factor B-2b | ||||
Refseq | XP_017426021.1 | 2e-68 | PREDICTED: heat stress transcription factor B-2b | ||||
Refseq | XP_017426023.1 | 2e-68 | PREDICTED: heat stress transcription factor B-2b | ||||
Refseq | XP_017426024.1 | 2e-68 | PREDICTED: heat stress transcription factor B-2b | ||||
Refseq | XP_017426025.1 | 2e-68 | PREDICTED: heat stress transcription factor B-2b | ||||
Refseq | XP_017426026.1 | 2e-68 | PREDICTED: heat stress transcription factor B-2b | ||||
Swissprot | Q9T0D3 | 1e-39 | HFB2B_ARATH; Heat stress transcription factor B-2b | ||||
TrEMBL | A0A151QW76 | 1e-104 | A0A151QW76_CAJCA; Heat stress transcription factor B-2b | ||||
STRING | XP_007158472.1 | 2e-65 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2037 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11660.1 | 4e-41 | HSF family protein |
Publications ? help Back to Top | |||
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