PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_44597
Common NameKK1_044002
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family B3
Protein Properties Length: 525aa    MW: 60940.9 Da    PI: 10.184
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_44597genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.58.8e-1716102697
                    ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
             B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                    ++  +l +g l++p kf+e++g+   ++ tl l +++g +W+++l  +k++g+++++kGWkeF++ + L  g  +vF+ +++s f   +++f
  C.cajan_44597  16 ITLQNLHQGKLMFPEKFVEKYGEG-LSTNTLFLSTPNGAEWKLNL--EKCDGKIWFQKGWKEFAEYHSLAHGHLLVFRCQRTSHF--QLRIF 102
                    477889999************443.35569***************..*******************************8777888..55555 PP
2B377.51.5e-24211313199
                    EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                    f+ v+ p +v+++++l lp +f++++ +  + +++ + l+ ++gr+W  ++ +    r+++ ry l++GWk Fvk n+Lk+gD+++F+l+ r++ +
  C.cajan_44597 211 FLVVMHPYNVGSRCLLGLPCEFCRSYiD-LHDQQRHINLQELNGRVWPSRYLItknnRNTKPRYRLKSGWKAFVKHNNLKVGDVCTFELICRTKLT 305
                    6677888899999*************73.3456779***************776544444445********************************* PP

                    .EEEEE-S CS
             B3  92 lvvkvfrk 99 
                    l+v++fr+
  C.cajan_44597 306 LLVHIFRE 313
                    ******97 PP
3B372.55.4e-23376477399
                    EE-..-HHHHT.T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
             B3   3 kvltpsdvlks.grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     v  ps+ ++s g l lp +f++++ +  + +++ + l+ ++gr+W  ++ +    r+++ ry l++GWk Fvk n+Lk+gD+++F+l+ r++ +l
  C.cajan_44597 376 AVIHPSYLGSSaGHLGLPCEFCRSYiD-LHDQQRHINLQELNGRVWPSRYLItknnRNTKPRYRLKSGWKAFVKHNNLKVGDVCTFELICRTKLTL 470
                    555667777767789**********73.3456779***************776544444445********************************** PP

                    EEEEE-S CS
             B3  93 vvkvfrk 99 
                    +v++fr+
  C.cajan_44597 471 LVHIFRE 477
                    *****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.28E-206105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-208103IPR015300DNA-binding pseudobarrel domain
CDDcd100171.40E-1511103No hitNo description
PROSITE profilePS5086312.84411105IPR003340B3 DNA binding domain
SMARTSM010191.4E-1212105IPR003340B3 DNA binding domain
PfamPF023624.2E-1416101IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-24202313IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-25206314IPR015300DNA-binding pseudobarrel domain
CDDcd100171.58E-24209312No hitNo description
SMARTSM010193.6E-16211314IPR003340B3 DNA binding domain
PfamPF023625.4E-22211313IPR003340B3 DNA binding domain
PROSITE profilePS5086314.776211314IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-23366477IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-23369479IPR015300DNA-binding pseudobarrel domain
CDDcd100174.63E-22372476No hitNo description
SMARTSM010198.6E-17374478IPR003340B3 DNA binding domain
PfamPF023621.7E-20374477IPR003340B3 DNA binding domain
PROSITE profilePS5086313.902375478IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MATQPQVKPI HFFRIITLQN LHQGKLMFPE KFVEKYGEGL STNTLFLSTP NGAEWKLNLE  60
KCDGKIWFQK GWKEFAEYHS LAHGHLLVFR CQRTSHFQLR IFDWSALEIE YPSKRIECET  120
GSNNQGNTST NVGKFEYHRP GQKRKDNSSL EFVQRYQLRS RNCLKVEKTE ILPKEILHHT  180
GTKCKEKSKA TANQVSALDR ASSFKPCNPF FLVVMHPYNV GSRCLLGLPC EFCRSYIDLH  240
DQQRHINLQE LNGRVWPSRY LITKNNRNTK PRYRLKSGWK AFVKHNNLKV GDVCTFELIC  300
RTKLTLLVHI FRETDSSNCS TPQGRIDFYF SIQNNSLYLK VGLIFNFAEK SKATTNQVTA  360
LDRANSFKPC NPFFLAVIHP SYLGSSAGHL GLPCEFCRSY IDLHDQQRHI NLQELNGRVW  420
PSRYLITKNN RNTKPRYRLK SGWKAFVKHN NLKVGDVCTF ELICRTKLTL LVHIFRETDS  480
SNCSTPQGRA GIPRQSRDGF GYYLRVRVYL PSLQLAFTKY TSQRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A6e-1218531223141B3 domain-containing transcription factor VRN1
4i1k_B6e-1218531223141B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_44597
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020206625.10.0B3 domain-containing transcription factor VRN1
TrEMBLA0A151QXI30.0A0A151QXI3_CAJCA; B3 domain-containing transcription factor VRN1
STRINGGLYMA18G30790.11e-143(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-34B3 family protein