PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_44595 | ||||||||
Common Name | KK1_044000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | B3 | ||||||||
Protein Properties | Length: 166aa MW: 19425 Da PI: 8.0211 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.4 | 1.5e-14 | 2 | 71 | 17 | 90 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ++p +f+e++g+ + l l++++g +W+++l +k+ g++++++GWkeF++ + L g +vF+ +++s f C.cajan_44595 2 MFPERFVERYGE--GLPNSLFLKTPNGAEWRLNL--EKRNGKIWFEEGWKEFAEHHSLAHGHLLVFRCQRTSLF 71 579*******74..47778***************..9******************************6654555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 14.142 | 1 | 79 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0029 | 1 | 79 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.29E-13 | 2 | 77 | No hit | No description |
SuperFamily | SSF101936 | 8.83E-18 | 2 | 86 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 6.9E-12 | 3 | 71 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-19 | 3 | 88 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
QMFPERFVER YGEGLPNSLF LKTPNGAEWR LNLEKRNGKI WFEEGWKEFA EHHSLAHGHL 60 LVFRCQRTSL FQVFILDMSA LEIDYPSERV EGEKASNNHG NRPPNDENLE YHRPGQKRKY 120 NLAVDFLPLY HLRSSTSIKV ENTVILSKEA LHHTDTKCKG IRFCCP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_44595 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020206625.1 | 1e-112 | B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A151QXE6 | 1e-121 | A0A151QXE6_CAJCA; B3 domain-containing transcription factor VRN1 (Fragment) | ||||
STRING | GLYMA18G30790.1 | 7e-68 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49475.1 | 9e-21 | B3 family protein |