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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_43528 | ||||||||
Common Name | KK1_012372 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | B3 | ||||||||
Protein Properties | Length: 65aa MW: 7806.06 Da PI: 10.5355 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.1 | 1.3e-17 | 6 | 58 | 31 | 83 |
.--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F C.cajan_43528 6 RPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVNQKNLVSGDAVLFL 58 44679**********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.589 | 1 | 65 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.01E-21 | 1 | 60 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.1E-21 | 2 | 59 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.9E-15 | 5 | 58 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.51E-12 | 6 | 57 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 65 aa Download sequence Send to blast |
DYKQQRPSQE LVAKDLHGVE WKFRHIYRGQ PRRHLLTTGW SIFVNQKNLV SGDAVLFLRC 60 VYMFK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 2e-25 | 1 | 59 | 154 | 212 | Auxin response factor 1 |
4ldw_A | 2e-25 | 1 | 59 | 154 | 212 | Auxin response factor 1 |
4ldw_B | 2e-25 | 1 | 59 | 154 | 212 | Auxin response factor 1 |
4ldx_A | 1e-25 | 1 | 59 | 154 | 212 | Auxin response factor 1 |
4ldx_B | 1e-25 | 1 | 59 | 154 | 212 | Auxin response factor 1 |
4ldy_A | 2e-25 | 1 | 59 | 154 | 212 | Auxin response factor 1 |
4ldy_B | 2e-25 | 1 | 59 | 154 | 212 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_43528 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ617271 | 2e-53 | FJ617271.1 Lotus japonicus auxin response factor 4 (ARF4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009592534.1 | 8e-37 | PREDICTED: auxin response factor 4-like | ||||
Refseq | XP_029126027.1 | 6e-37 | auxin response factor 4 | ||||
Refseq | XP_029127060.1 | 6e-37 | auxin response factor 4 | ||||
Refseq | XP_029127762.1 | 6e-37 | auxin response factor 4-like | ||||
Swissprot | Q9ZTX9 | 2e-36 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | A0A151TGC4 | 4e-42 | A0A151TGC4_CAJCA; Transcription factor bHLH63 | ||||
STRING | GLYMA12G07560.1 | 3e-35 | (Glycine max) | ||||
STRING | XP_009592534.1 | 3e-36 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15884 | 6 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 8e-39 | auxin response factor 4 |