PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_43342
Common NameKK1_043383
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 294aa    MW: 33332.9 Da    PI: 8.2147
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_43342genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.71.3e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l++++ + G g+W+t +++ g++R++k+c++rw +yl
    C.cajan_43342 15 KGPWTPEEDEKLIEYISKQGHGSWRTLPKRAGLNRCGKSCRLRWTNYL 62
                     79********************************************97 PP
2Myb_DNA-binding56.94.8e-1868111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+eE+ l+++++  lG++ W++Ia++++ gRt++++k++w++
    C.cajan_43342  68 RGKFTEEEERLIINLHSVLGNK-WSKIAAHLP-GRTDNEIKNYWNT 111
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.6221062IPR017930Myb domain
SuperFamilySSF466891.02E-3212109IPR009057Homeodomain-like
SMARTSM007173.6E-151464IPR001005SANT/Myb domain
PfamPF002494.7E-171562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-251669IPR009057Homeodomain-like
CDDcd001672.82E-111762No hitNo description
PROSITE profilePS5129428.11863117IPR017930Myb domain
SMARTSM007174.6E-1767115IPR001005SANT/Myb domain
PfamPF002491.1E-1668111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2770117IPR009057Homeodomain-like
CDDcd001676.36E-1370111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGRSPCCEES SSVKKGPWTP EEDEKLIEYI SKQGHGSWRT LPKRAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FTEEEERLII NLHSVLGNKW SKIAAHLPGR TDNEIKNYWN TSIRKKLLKM  120
GIDPETHKPR TDFNHLMNLS QLLGMSNLSS AMNTTWGNNN PFGMPADITQ LAKIQLLQSL  180
LQIMNSNSFV NMGNPNLLVG NPNLNPLFLN GLNPLQPKEP VVLSGSEEYA NHVNEEPLPA  240
LVVSSPRMGT FNQMNNGCNM AQTFTKSPSN TIFDDWEKFL EDETTGSYWK EILE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-32151177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_43342
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-127AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020206207.10.0transcription factor MYB41
SwissprotQ8GWP03e-82MYB39_ARATH; Transcription factor MYB39
TrEMBLA0A151QZ910.0A0A151QZ91_CAJCA; Transcription factor MYB39
STRINGGLYMA09G33870.11e-167(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-87myb domain protein 9