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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_42478 | ||||||||
Common Name | KK1_045375 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 201aa MW: 22992.6 Da PI: 8.2142 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.7e-16 | 23 | 66 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E++l++d++ ++G++ W++Ia++++ gRt++++k++w++ C.cajan_42478 23 RGNITLQEQLLILDLHSRWGNR-WSKIAEHLP-GRTDNEIKNYWRT 66 7899******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 7.105 | 1 | 17 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.3E-19 | 3 | 73 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.5E-10 | 3 | 29 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.872 | 18 | 72 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-13 | 22 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 23 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.94E-11 | 27 | 66 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.9E-18 | 30 | 67 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
SLKRTGKSCR LRWLNYLRPN VRRGNITLQE QLLILDLHSR WGNRWSKIAE HLPGRTDNEI 60 KNYWRTRVVK QAKQLKCDVN SKQFRDTLRF VWMPRMLERI QAQASSNHAQ TTLNDTAQAH 120 SEPCGATNTG LFSEASSAIE LHAPSFSDSS ACYNLRSCSA EEGSSSNLYS YSEIPENGFG 180 GADLWTDENI YFLQQQLADD F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-15 | 4 | 64 | 37 | 97 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 2e-15 | 4 | 64 | 60 | 120 | MYB TRANSFORMING PROTEIN |
1mse_C | 1e-15 | 4 | 64 | 37 | 97 | C-Myb DNA-Binding Domain |
1msf_C | 1e-15 | 4 | 64 | 37 | 97 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_42478 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097379 | 1e-108 | BT097379.1 Soybean clone JCVI-FLGm-16I17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020207547.1 | 1e-149 | transcription factor MYB2 | ||||
TrEMBL | A0A151QTT9 | 1e-149 | A0A151QTT9_CAJCA; Transcription factor MYB21 (Fragment) | ||||
STRING | XP_007163206.1 | 1e-108 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF875 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47190.1 | 1e-66 | myb domain protein 2 |