PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_42409 | ||||||||
Common Name | KK1_043399 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 395aa MW: 44231.8 Da PI: 6.0446 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 29.1 | 1.3e-09 | 9 | 52 | 1 | 44 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 k+i n + r f kR++ ++KK +E S C+++ +++++ +g C.cajan_42409 9 KPIPNGRDRDLAFRKRKKVLMKKMSEFSSVCGVNTCLVMYDGNG 52 6789999********************************97665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.241 | 1 | 52 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.3E-5 | 1 | 62 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.24E-15 | 2 | 85 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.00E-16 | 2 | 89 | No hit | No description |
Pfam | PF00319 | 1.3E-10 | 11 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MGRPKLILKP IPNGRDRDLA FRKRKKVLMK KMSEFSSVCG VNTCLVMYDG NGDDAPPHTW 60 PQDPNEVHSI IARYESVKNE KLPKNFDLNN FFYDRKNAIE VETCKVKNET LKIKYPTWHP 120 SFDNLGIKEL SNFIAMLDHK FEACNQRVEM AKYKRQVEAN FNFMQCMVPS EIAAPTQSQL 180 NFMHGNGMSQ NQLTNAPMKP LNDGNLVTSY PLNHDQGSCS KPPMLHFDQN LMQLMTKNKG 240 VVVDSTNQVG GPLDCATKID ANGNSTNQDD VPADLTKLVD ESLDYFSQLG EIEDLTSPLD 300 EFVNWVSQPD VSRNWTNQHG VPMIGGSTAA TSFHGDTHNH ESALSNYNGG LQSMQPYNYD 360 AALQNIAPQS QNLHQMATLP PLLPSVEISE GSVHQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 21 | 25 | RKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_42409 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020206215.1 | 0.0 | agamous-like MADS-box protein AGL103 | ||||
TrEMBL | A0A151QZ15 | 0.0 | A0A151QZ15_CAJCA; MADS-box protein FBP24 | ||||
STRING | GLYMA15G23335.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF534 | 31 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 1e-20 | M-type_MADS family protein |