PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

MYB

Protein Properties

Length: 290aa MW: 32158.9 Da PI: 5.7766

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_41764	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.4	1.4e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv +++++G+g+W++++ + g+ R+ k+c++rw +yl C.cajan_41764 14 KGPWTPEEDIMLVSYIQEHGPGNWRAVPTKTGLSRCSKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	49.2	1.3e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E++ ++++ +lG++ W++Ia++++ Rt++++k++w+++l C.cajan_41764 67 RGNFTEQEEKMIIHLQDLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.416	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	1.37E-31	11	108	IPR009057	Homeodomain-like
SMART	SM00717	4.9E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	2.31E-11	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-24	65	117	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.345	66	116	IPR017930	Myb domain
SMART	SM00717	4.0E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	8.0E-15	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	7.67E-11	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MGRPPCCDKE GVKKGPWTPE EDIMLVSYIQ EHGPGNWRAV PTKTGLSRCS KSCRLRWTNY 60 LRPGIKRGNF TEQEEKMIIH LQDLLGNRWA AIASYLPQRT DNDIKNYWNT HLRKKLKKLH 120 SGCEALSPEK PPSLSASNSY PSDSSSSFSS TKPTQSLCYA SSAENIARML KGWMKNPPKS 180 SRTNSSVTQN SFNNLAASGA DTASSGAEEP SSAELSENFE SLFDFDQSLE SSNSDQFSQS 240 LSPEATVLQD DESKPDICAE IMPFSLLEKW LLDEAGCQEK VGYCGDAKCF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	6e-28	14	116	4	105	MYB PROTO-ONCOGENE PROTEIN
1mse_C	7e-28	14	116	4	105	C-Myb DNA-Binding Domain
1msf_C	7e-28	14	116	4	105	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269\|PubMed:22018045}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_41764

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269\|PubMed:22018045}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ768022	1e-172	FJ768022.1 Glycine max transcription factor MYB392 mRNA, complete cds.
GenBank	KT031204	1e-172	KT031204.1 Glycine max clone HN_CCL_69 MYB/HD-like transcription factor (Glyma18g49360.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020203788.1	0.0	transcription factor MYB30
Swissprot	B3VTV7	7e-96	MYB60_VITVI; Transcription factor MYB60
TrEMBL	A0A151R7U4	0.0	A0A151R7U4_CAJCA; Myb-related protein 306 family
STRING	GLYMA09G37340.1	1e-164	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1016	34	115

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08810.1	1e-84	myb domain protein 60

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507]