![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | C.cajan_41229 | ||||||||
Common Name | KK1_043286 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 210aa MW: 24494.3 Da PI: 6.7572 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.7 | 5.3e-13 | 21 | 64 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT++E+ l++ + k++G+g Wk Ia+++ +++t q+ s+ qk+ C.cajan_41229 21 WTEDEHRLFLLGLKRFGKGKWKDIAKKVLLTKTKTQIASHAQKF 64 ******************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.843 | 13 | 69 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-9 | 13 | 64 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.77E-14 | 15 | 69 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-7 | 17 | 67 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 2.1E-15 | 19 | 68 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.3E-10 | 20 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.59E-8 | 21 | 65 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 210 aa Download sequence Send to blast |
MTPHLKQEST AASQRTKCVH WTEDEHRLFL LGLKRFGKGK WKDIAKKVLL TKTKTQIASH 60 AQKFFLHKSS AKKRKSIHDL TLDDDANFKY DQQNREITGS PGNNLVQYSI DEHSPNEQLQ 120 EEPSPPFEAY SVLQHFEQQQ QSEAPSAVQQ LPHHLDNHDL APLPDQIELP QLFNHENFIP 180 HFAQLYSSDI FHQDLPNNFD FNFFDPKTWK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | C.cajan_41229 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A151QZC5 | 1e-153 | A0A151QZC5_CAJCA; Myb-like protein J |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16777 | 4 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G04760.1 | 3e-15 | MYB family protein |