PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_40968

Common Name

KK1_039816

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

WRKY

Protein Properties

Length: 273aa MW: 30611 Da PI: 4.7569

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_40968	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.8	6.2e-30	85	143	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers dp+++++tY+++Hnh+ C.cajan_40968 85 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSCVDPTMLVVTYSSDHNHP 143 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.2E-31	79	145	IPR003657	WRKY domain
SuperFamily	SSF118290	9.29E-26	82	145	IPR003657	WRKY domain
SMART	SM00774	1.1E-34	84	144	IPR003657	WRKY domain
PROSITE profile	PS50811	31.755	85	145	IPR003657	WRKY domain
Pfam	PF03106	1.9E-25	86	143	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MDSKFSNNRK PSYTINEQED TDASQENNIA DSPPSSTVLN IDGLVTSPTS SSKRSRRAIQ 60 KRVVQIPIKE TEGCRLKGES NTPPSDSWAW RKYGQKPIKG SPYPRGYYRC SSSKGCPARK 120 QVERSCVDPT MLVVTYSSDH NHPWPLSRNH TRPTKKPEPE PEPEPEPEPE PEPVLDPVEP 180 EEKFADLGRD DSMISTADEM GWFGEMETTS STVLESPIMT TGFHADVALL PMREEDESLF 240 ADLGELPECS VVFRQGMLAE RRRYTAPWCG TTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	8e-20	86	145	18	79	Disease resistance protein RRS1
5w3x_D	8e-20	86	145	18	79	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00167	DAP	Transfer from AT1G29280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_40968

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU019584	1e-143	EU019584.1 Glycine max WRKY48 (WRKY48) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020203520.1	0.0	probable WRKY transcription factor 65 isoform X1
Swissprot	Q9LP56	5e-79	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	A0A151R8T3	0.0	A0A151R8T3_CAJCA; Putative WRKY transcription factor 65
STRING	GLYMA08G12460.1	1e-158	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2770	34	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	8e-77	WRKY DNA-binding protein 65

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]