PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_40825
Common NameKK1_042251
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GATA
Protein Properties Length: 80aa    MW: 9447.17 Da    PI: 11.7957
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_40825genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.81.5e-181751135
           GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                   Cs+C++++Tp+WR gp g  tLCnaCG++y++ +l
  C.cajan_40825 17 CSHCNVKETPQWRVGPLGRNTLCNACGMRYKSGRL 51
                   *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.0E-131161IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.781147IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-141449IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577167.6E-151473No hitNo description
CDDcd002021.92E-121665No hitNo description
PfamPF003202.1E-161751IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MKRKRRCKKR TYSKRRCSHC NVKETPQWRV GPLGRNTLCN ACGMRYKSGR LLPEYRPASS  60
PTFNVNKHSN VHKKILIMRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115KRKRRCKKRTYSKRR
2410RRCKKRT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_40825
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020205415.15e-53putative GATA transcription factor 13
SwissprotO826323e-30GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A151R1Y92e-51A0A151R1Y9_CAJCA; GATA transcription factor 11
STRINGGLYMA01G10390.17e-32(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1634779
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-32GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]