PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_40813
Common NameKK1_040501
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family B3
Protein Properties Length: 408aa    MW: 45558.6 Da    PI: 9.028
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_40813genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.21.1e-16351051387
                    TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
             B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                    ++rl lpk+f +++++k   +  ++l+ + g +W++ l  + ++++ +++ GW++Fvk++ Lke+D +vFk++g 
  C.cajan_40813  35 EQRLALPKTFSDNIKKK--LPENVSLKGPGGVVWNIGL--TTRDDTLYFAHGWEQFVKDHLLKENDLLVFKYNGG 105
                    5689******9877655..7789***************..9******************************9874 PP
2B337.63.9e-12282370394
                    EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
             B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     v+ ps+v k+  +++p++ + ++ +++ +  ++ l+   + +W  +++y   + +  lt+GWk+F+ +n+L+e D++vFk  ++++ +lv+
  C.cajan_40813 282 VVMRPSHVYKRFFVSMPNRWIGDYVSPTSQ--DVLLRM-GNGEWIARYSYHAIRHTGGLTGGWKHFALDNNLEEFDVCVFKPASKENDTLVI 370
                    5789*****************999877555..555555.4479*****9955555556***********************77666665655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.49E-1821106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.57823132IPR003340B3 DNA binding domain
CDDcd100172.04E-1625106No hitNo description
Gene3DG3DSA:2.40.330.109.4E-1825106IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.6E-1226111IPR003340B3 DNA binding domain
PfamPF023624.8E-1335105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-16275375IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-14279363IPR015300DNA-binding pseudobarrel domain
CDDcd100171.84E-14279376No hitNo description
SMARTSM010193.4E-5280378IPR003340B3 DNA binding domain
PROSITE profilePS508639.996280376IPR003340B3 DNA binding domain
PfamPF023628.2E-11281370IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MGSQNCDGCR SWAEDIYWSH FQFLHFVQFL RTDYEQRLAL PKTFSDNIKK KLPENVSLKG  60
PGGVVWNIGL TTRDDTLYFA HGWEQFVKDH LLKENDLLVF KYNGGSLNKK KETANSLDEG  120
NSPSNVAVEC ASHDRTVNVN GMKEPMDVPF ETPIEKTFNA GVESAGAEQV MPGGVTIAFS  180
PDAVPSETVN GKRVRKLVSA VRHVQTKRRG RPAKVSHVVR ERALDWVTVD AAEPASAVKS  240
AVKSGTGTYE LYTSNRRPVT EAETKRAHDL AQAARTNDSL VVVMRPSHVY KRFFVSMPNR  300
WIGDYVSPTS QDVLLRMGNG EWIARYSYHA IRHTGGLTGG WKHFALDNNL EEFDVCVFKP  360
ASKENDTLVI DMTIFRVVEE IVPLTAVSPA GTGRRGRKPT MKTILTET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-1424938117146B3 domain-containing transcription factor VRN1
4i1k_B5e-1424938117146B3 domain-containing transcription factor VRN1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_40813
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020204106.10.0B3 domain-containing protein REM16
TrEMBLA0A151R6Y90.0A0A151R6Y9_CAJCA; B3 domain-containing protein REM16
STRINGGLYMA17G36490.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-33B3 family protein