PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_40404
Common NameKK1_043319
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 372aa    MW: 42107.5 Da    PI: 4.6512
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_40404genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-152067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd +l+++v++ G g+W+ + ++ g+ R++k+c++rw ++l
    C.cajan_40404 20 KGPWTSEEDAILAEYVTKNGIGNWNVVRQRTGLARCGKSCRLRWTNHL 67
                     79*******************************************996 PP
2Myb_DNA-binding48.32.2e-1573116146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g +++eE+ +++++++++G++ W++ a++++ gRt++++k++w++
    C.cajan_40404  73 KGVFSPEEQNKIIELHALMGNK-WAKMAQELP-GRTDNEIKNFWNT 116
                      789*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.9061567IPR017930Myb domain
SuperFamilySSF466891.76E-2818114IPR009057Homeodomain-like
SMARTSM007172.0E-111969IPR001005SANT/Myb domain
PfamPF002491.9E-132067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-222174IPR009057Homeodomain-like
CDDcd001674.50E-102267No hitNo description
PROSITE profilePS5129424.48268122IPR017930Myb domain
SMARTSM007175.9E-1672120IPR001005SANT/Myb domain
PfamPF002499.6E-1573116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2575121IPR009057Homeodomain-like
CDDcd001678.84E-1276118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MCSLSHGESS DHEQNKYLKK GPWTSEEDAI LAEYVTKNGI GNWNVVRQRT GLARCGKSCR  60
LRWTNHLRPD LKKGVFSPEE QNKIIELHAL MGNKWAKMAQ ELPGRTDNEI KNFWNTRLKK  120
RKRAGLPLYP DDIKPVLNSN NPQSSALNVS IQRANDSEAG TSSSVPELVF NNYNPNSENH  180
PLYVQPVSDI PQNSTFEQQD LDNQVMPLPE QQHDPDNLHT SLESTCVNIT LPSTIDYDQL  240
QGDYKSGGFA CSSGPSSISE LPPFPPFDDN DILRQHPPTE TLHSEPLVSR SPRSNGYLEV  300
IPKILERSDH SSMQGELNSE NQENLEQEDL ANQDVFYDFS WLEDYDKDES AIKDTLYSIV  360
YPFIPSNTNT NC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27181215107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_40404
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020206156.10.0hybrid signal transduction histidine kinase A
TrEMBLA0A151QZ820.0A0A151QZ82_CAJCA; Transcription factor GAMYB
STRINGXP_007141541.17e-94(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.15e-60myb domain protein 101