PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_40160
Common NameKK1_044057
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family B3
Protein Properties Length: 531aa    MW: 60850.6 Da    PI: 7.4824
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_40160genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.72.9e-1516107199
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    ffk+ ++ + +  g l lp++f++++g   +++  + ++ ++g +W+++l  + ++g++++++GWkeF+    L+ g  + F+++++s f   v++
  C.cajan_40160  16 FFKIILTRSLT-DGKLKLPNNFTRKYGDGMPNP--VFFKPPDGTEWKIYL--TEHDGEIWFQDGWKEFAAHYSLDHGHLLFFEYEETSHF--DVHI 104
                    66766665555.556***********7665565..***************..********************************998999..9999 PP

                    E-S CS
             B3  97 frk 99 
                    f++
  C.cajan_40160 105 FDN 107
                    987 PP
2B340.83.9e-132713491398
                    TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
             B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                     + l +p  f e++ +k  ++  + le ++  sW v +  +  +    +t+GW++F+++n+L++gD++vF+++++ ++  ++v++fr
  C.cajan_40160 271 VDYLEIPAIFSEKYLKK--THAVVLLEILDEGSWPVIC--SAPR----ITGGWQNFASENNLNVGDVCVFEMIQKiQSLAFKVSIFR 349
                    567889*****999644..344677788**********..4444....9************************999**999999998 PP
3B3438.1e-144455241798
                    E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
             B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +pk+f++++  +   ++++++   + + W v++ ++ + g+ vl++GW  F ++n+L+ g +++F+ ++r++++l v+vf+
  C.cajan_40160 445 QVPKEFVTKYFVNM--NQKVMMIKFRKKLWPVTFVFNESWGTGVLSAGWPLFSRENELQRGHVCIFEIVNREDAKLDVHVFK 524
                    47********6553..348************************************************9999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.51E-2111108IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-2114108IPR015300DNA-binding pseudobarrel domain
CDDcd100172.72E-1415106No hitNo description
PROSITE profilePS5086312.98515108IPR003340B3 DNA binding domain
PfamPF023627.0E-1316107IPR003340B3 DNA binding domain
SMARTSM010199.0E-1616108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-19252349IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-19253349IPR015300DNA-binding pseudobarrel domain
CDDcd100174.67E-14258349No hitNo description
PROSITE profilePS5086311.547259351IPR003340B3 DNA binding domain
SMARTSM010192.1E-7260351IPR003340B3 DNA binding domain
PfamPF023626.4E-11265350IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.4E-14396524IPR015300DNA-binding pseudobarrel domain
CDDcd100178.95E-10427524No hitNo description
SMARTSM010190.0049427526IPR003340B3 DNA binding domain
PROSITE profilePS5086311.152429526IPR003340B3 DNA binding domain
SuperFamilySSF1019361.79E-13434524IPR015300DNA-binding pseudobarrel domain
PfamPF023625.5E-10445524IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MASPGNKLSL STAIHFFKII LTRSLTDGKL KLPNNFTRKY GDGMPNPVFF KPPDGTEWKI  60
YLTEHDGEIW FQDGWKEFAA HYSLDHGHLL FFEYEETSHF DVHIFDNSAL EIDYLSHGTR  120
DGKDNDVQIS GDSVKILDEQ CHDGKDIVVQ ISDDSVEISD EEQCSRRKTR VKSTASSSQP  180
DKKMKNSITP DVERSPNGVN LHQHVKSRST SFQDVKFMQQ KLDEDEEGKG IFNNKCPKVE  240
QLTPTALDKA RAFKSKHPSF LLVIKPSFID VDYLEIPAIF SEKYLKKTHA VVLLEILDEG  300
SWPVICSAPR ITGGWQNFAS ENNLNVGDVC VFEMIQKIQS LAFKVSIFRG AEEPSRPISQ  360
GCRVGSSSQR TLQLENHFKS EILKSTALRE ARKFTSENPF FMVTLKMQGN TTRCPVSLQV  420
LFFFHEFFGL VLRVMNIYIH NLMQQVPKEF VTKYFVNMNQ KVMMIKFRKK LWPVTFVFNE  480
SWGTGVLSAG WPLFSRENEL QRGHVCIFEI VNREDAKLDV HVFKGHTKVI L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1324635235144B3 domain-containing transcription factor VRN1
4i1k_B2e-1324635235144B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_40160
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020206683.10.0B3 domain-containing transcription factor VRN1 isoform X1
TrEMBLA0A151QXF00.0A0A151QXF0_CAJCA; B3 domain-containing transcription factor VRN1
STRINGGLYMA09G20150.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-40B3 family protein