PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_39850 | ||||||||
Common Name | KK1_037445 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 255aa MW: 28392.7 Da PI: 10.5233 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 44.9 | 4.5e-14 | 1 | 91 | 1 | 91 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki.rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllalllv 87 md d+ + rn+gyyepa +k++lglqlmss++e+ r++ + ls++++a+++rd ++ +rd+++++ +++k+++++++ C.cajan_39850 1 MDGDNGLNiRNWGYYEPA--IKSHLGLQLMSSMPEKPLIGgRNAAV-LSGTNGAFHHRDigmhqatypTEY-MRDAWISS-------QRDKYMNMIPT 87 888888888********9..**************988766355555.9***********999999998888.99999999.......77888999888 PP GAGA_bind 88 ensl 91 +++ C.cajan_39850 88 NHNY 91 8874 PP | |||||||
2 | GAGA_bind | 286 | 1.6e-87 | 90 | 255 | 134 | 301 |
GAGA_bind 134 alpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGG 229 ++ +eea+ ++k + ++kkrq +k+pk++kakk+k+ ++++k++++++ +r++ +kk++++v+ng+++D+s++P+PvCsCtGa++qCY+WG+GG C.cajan_39850 90 NYGVEEAPVVEKPNGTRKKRQGPKVPKSPKAKKPKRGPRTPKDENTPSV--QRARVPKKTTEIVINGIDMDISSIPIPVCSCTGAPQQCYRWGSGG 183 567888999999999*********************7777755555555..79******************************************* PP GAGA_bind 230 WqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 WqSaCCtt +S+yPLP+stkrrgaRiagrKmS gafkk+LekLaaeGy++snp+DL+++WAkHGtnkfvtir C.cajan_39850 184 WQSACCTTGMSIYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLAAEGYNFSNPIDLRTYWAKHGTNKFVTIR 255 ***********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 5.5E-16 | 1 | 94 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 7.3E-156 | 1 | 255 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 2.1E-87 | 93 | 255 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MDGDNGLNIR NWGYYEPAIK SHLGLQLMSS MPEKPLIGGR NAAVLSGTNG AFHHRDIGMH 60 QATYPTEYMR DAWISSQRDK YMNMIPTNHN YGVEEAPVVE KPNGTRKKRQ GPKVPKSPKA 120 KKPKRGPRTP KDENTPSVQR ARVPKKTTEI VINGIDMDIS SIPIPVCSCT GAPQQCYRWG 180 SGGWQSACCT TGMSIYPLPM STKRRGARIA GRKMSIGAFK KVLEKLAAEG YNFSNPIDLR 240 TYWAKHGTNK FVTIR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_39850 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098455 | 0.0 | BT098455.1 Soybean clone JCVI-FLGm-12B13 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020240431.1 | 1e-176 | protein BASIC PENTACYSTEINE2 | ||||
Refseq | XP_020240432.1 | 1e-176 | protein BASIC PENTACYSTEINE2 | ||||
Refseq | XP_020240433.1 | 1e-176 | protein BASIC PENTACYSTEINE2 | ||||
Refseq | XP_020240434.1 | 1e-176 | protein BASIC PENTACYSTEINE2 | ||||
Swissprot | Q9SKD0 | 2e-84 | BPC1_ARATH; Protein BASIC PENTACYSTEINE1 | ||||
TrEMBL | A0A151RFM5 | 0.0 | A0A151RFM5_CAJCA; Uncharacterized protein | ||||
STRING | GLYMA09G30040.4 | 1e-171 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2370 | 32 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14685.3 | 2e-85 | basic pentacysteine 2 |