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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_39371 | ||||||||
Common Name | KK1_035218 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 105aa MW: 11864.3 Da PI: 8.4335 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.7 | 2.3e-07 | 10 | 55 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 g+W+ + + + +a + + ++ +W +a+ +g g+t+ ++k ++ C.cajan_39371 10 GSWSVKDNKAFEKALAVYDKDtpdRWYNVAHAVG-GKTPDEVKRHYE 55 79********************************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.075 | 4 | 58 | IPR017877 | Myb-like domain |
SMART | SM00717 | 4.2E-7 | 8 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.59E-12 | 10 | 66 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.0E-5 | 10 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-5 | 11 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.51E-4 | 18 | 58 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
MASSSMSASG SWSVKDNKAF EKALAVYDKD TPDRWYNVAH AVGGKTPDEV KRHYELLVQD 60 VQHIESGRVP FPNYKKSGGS EEEKRYHSLY TLIASYSHIL LVKQC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-38 | 1 | 89 | 1 | 90 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_39371 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 7e-94 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027352977.1 | 3e-55 | protein RADIALIS-like 2 | ||||
Swissprot | Q58FS3 | 4e-38 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A151RLC1 | 1e-72 | A0A151RLC1_CAJCA; Uncharacterized protein | ||||
STRING | GLYMA02G18210.1 | 6e-44 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 1e-35 | RAD-like 1 |
Publications ? help Back to Top | |||
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