PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_38590
Common NameKK1_037711
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family LBD
Protein Properties Length: 205aa    MW: 23032.1 Da    PI: 5.6593
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_38590genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.71.7e-3781091101
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                    +C aCk++++kC +dC++apyf ++q  ++f+ vhk+FG+snv+k+l +++ ++r+d++ s+++eA+ar++dP+yG+v+++ +lqqq+e l+ ela
  C.cajan_38590   8 PCGACKYQKKKCRNDCIFAPYFGSNQgYAQFEKVHKVFGTSNVSKMLLDVEVNHRHDVIGSILFEAQARLDDPIYGCVSTVIALQQQVEALQGELA 103
                    7***********************9977******************************************************************** PP

         DUF260  96 llkeel 101
                    ++k++l
  C.cajan_38590 104 MVKNQL 109
                    **9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.7067109IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-368106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MLDSSSPPCG ACKYQKKKCR NDCIFAPYFG SNQGYAQFEK VHKVFGTSNV SKMLLDVEVN  60
HRHDVIGSIL FEAQARLDDP IYGCVSTVIA LQQQVEALQG ELAMVKNQLK NTSILYEGLQ  120
RNTYQQQQLQ PNINVAMQPQ YSNNSSVSTN FMNMSSFNSS FDQLAMQTTP LTNNLKPLQF  180
PELPENEQAS MIPQVFNSDM ANLFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-28810911111LOB family transfactor Ramosa2.1
5ly0_B1e-28810911111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_38590
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201792.11e-151LOB domain-containing protein 20
SwissprotQ9SRV31e-52LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A151REP91e-150A0A151REP9_CAJCA; LOB domain-containing protein 20
STRINGXP_007162000.14e-80(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.13e-48LOB domain-containing protein 20