PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_38233
Common NameKK1_041903
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GATA
Protein Properties Length: 312aa    MW: 34819.2 Da    PI: 9.7684
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_38233genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.71.9e-19179212134
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                    C+ C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  C.cajan_38233 179 CADCHTTKTPLWRSGPRGPKSLCNACGIRQRKAR 212
                    *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577166.18E-13172213No hitNo description
SMARTSM004018.5E-21173224IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.69173209IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-15177212IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.38E-14178210No hitNo description
PROSITE patternPS003440179204IPR000679Zinc finger, GATA-type
PfamPF003203.6E-17179212IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010255Biological Processglucose mediated signaling pathway
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MIPAYRHSVS SVMPLDLNED QNHELLSPNH HASSSFSSLS SSYPILFNPP DQDQEARSYY  60
WQPTEKKIPS DHEEAEKIIP PSGSRDQSVA ESEQKVTVWK KEERNENLEA VAEDGSMNWM  120
SSKMRMTRKM VVSDQTDACV ADNTRHKFED QKQPLSPLGT DNSSSNNYSN HGNNTVRVCA  180
DCHTTKTPLW RSGPRGPKSL CNACGIRQRK ARRAMAAAAA AAGNGTVLVE AEKSVKGNKL  240
QKKEKKSRIE GAPQMKKKRK LGAKPSQSRS KFGFEDLTLR LRKNLAMHQV FPQDEKEAAI  300
LLMALSYGLV HG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255260KKKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_38233
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150342e-99AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020205216.10.0GATA transcription factor 21
TrEMBLA0A151R3020.0A0A151R302_CAJCA; Putative GATA transcription factor 20
STRINGGLYMA13G00200.11e-150(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-33cytokinin-responsive gata factor 1