PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_37133
Common NameKK1_036958
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family B3
Protein Properties Length: 332aa    MW: 39109.6 Da    PI: 7.983
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_37133genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.26.5e-18175262698
                    ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
             B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                    +++ + ++++l+lp +f +++ +k   + tl +ed  gr+W+v+l+  ++ g+ +++ GWk+F ++n+Lk+gD++ F+l++ ++f+++v+vfr
  C.cajan_37133 175 IQKTYIERDLLILPMEFSKHYLHK--DGATLFIED--GRTWDVELK-VNYCGQLTFSIGWKKFSQDNELKVGDVCGFELHKYKGFSFKVTVFR 262
                    56778899*********9888544..454666666..********5.6667789************************9988*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.503165IPR003340B3 DNA binding domain
SuperFamilySSF1019367.26E-13565IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-12777IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-20163262IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-20164263IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.86170264IPR003340B3 DNA binding domain
PfamPF023624.1E-15175262IPR003340B3 DNA binding domain
SMARTSM010193.1E-13175264IPR003340B3 DNA binding domain
CDDcd100173.07E-15185262No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MLNPVILSLP NGAKKKVYWL RHDGDVWFCN GWKEFATYSR LEASHFVVFR YEGNSSFNVI  60
IFGKSAVEVE YPLSSDSNEE VEETHGTDKN VEERSSHKGK RKKSPSPLSR TSKKIQISPK  120
IEVEEEDQLN HWKKKAGLDN SKYIHNGSFK RSIRNFHEKV KTMFHSENEH FTCAIQKTYI  180
ERDLLILPME FSKHYLHKDG ATLFIEDGRT WDVELKVNYC GQLTFSIGWK KFSQDNELKV  240
GDVCGFELHK YKGFSFKVTV FRFEEDSSTP LFIGIIYLLT IISNYELLHR NNFSYNIFTK  300
DHITFICQIL NEFLLFPLYM FIYIFPHNFH LF
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_37133
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020240062.10.0B3 domain-containing transcription factor VRN1
TrEMBLA0A151RGW30.0A0A151RGW3_CAJCA; B3 domain-containing transcription factor VRN1
STRINGGLYMA07G19395.11e-109(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF140231017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-23B3 family protein