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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_36447 | ||||||||
Common Name | KK1_038669 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 149aa MW: 17417.4 Da PI: 10.2945 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.1 | 1.5e-15 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i++++ r++t+ kR++gi+KK +EL +LC++ ++ ii ss C.cajan_36447 10 FISDNTARKTTYKKRKKGIIKKVSELTILCGIPACAIISSS 50 89************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.96E-21 | 1 | 82 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.245 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.7E-20 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.6E-14 | 10 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MTRKKVKLAF ISDNTARKTT YKKRKKGIIK KVSELTILCG IPACAIISSS FESKPEIWPD 60 PERAKQMIEK YLNEAVLDQN KNINQESFIM QRIDKARDRL KKLRQENCEK ETTLSLFQYM 120 QGKDLPDNVE ELKKLDKLIE KNKKGIEIK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKLAFISDNTARKTTYKKRK |
2 | 21 | 25 | KKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_36447 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020202584.1 | 1e-104 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A151RBX8 | 1e-102 | A0A151RBX8_CAJCA; MADS-box transcription factor PHERES 2 | ||||
STRING | GLYMA10G28320.1 | 6e-73 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13237 | 9 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26630.1 | 7e-28 | M-type_MADS family protein |