PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_36091 | ||||||||
Common Name | KK1_034497 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | NAC | ||||||||
Protein Properties | Length: 368aa MW: 41040.6 Da PI: 7.5525 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.9 | 1.4e-55 | 32 | 160 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 lppGfrFhPtdeel+++yL kkv +++++ ++i evd++k+ePw+Lp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd+e++s+ C.cajan_36091 32 LPPGFRFHPTDEELITYYLLKKVLDSSFTG-RAIVEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSk 126 79*************************999.88***************99999****************************************974 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 + +lvg+kktLvfy+grapkgek++Wvmheyrle C.cajan_36091 127 TCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLE 160 5567****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-63 | 25 | 184 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.999 | 32 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-28 | 33 | 159 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MDSFYHHHHH HHHHQPHFDN NNNNNNHNEP HLPPGFRFHP TDEELITYYL LKKVLDSSFT 60 GRAIVEVDLN KCEPWELPEK AKMGEKEWYF FSLRDRKYPT GLRTNRATEA GYWKATGKDR 120 EIYSSKTCSL VGMKKTLVFY RGRAPKGEKS NWVMHEYRLE GKFAYHYLSR SSKDEWVISR 180 VFQKNTTGGG STVSATATGG SKKTRMSASN VSSNIEPGSP SSIYLPPLLE SSPYTAASST 240 TAAATFNDRE SCSFDSAATN QREHVSCFST TNPSAFDHLA PPPEPPLDPF SRFHRNAVAV 300 SAVPSLRSLH DNLQLPFFFP PVGHGGSADV APFAAPGSWT APEDQRVAEG GGSGMPIVAS 360 ELDCMWGY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-51 | 32 | 187 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-51 | 32 | 187 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-51 | 32 | 187 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-51 | 32 | 187 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
4dul_A | 5e-51 | 32 | 187 | 17 | 168 | NAC domain-containing protein 19 |
4dul_B | 5e-51 | 32 | 187 | 17 | 168 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division. {ECO:0000269|PubMed:10079219, ECO:0000269|PubMed:10750709, ECO:0000269|PubMed:12163400, ECO:0000269|PubMed:12492830, ECO:0000269|PubMed:12610213, ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15500463, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16798887, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:17122068, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247, ECO:0000269|PubMed:9212461}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_36091 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM and SYD, at the chromatin level, and conferring a very specific spatial expression pattern. Precise spatial regulation by post-transcriptional repression directed by the microRNA miR164. {ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16854978, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235397 | 1e-113 | AC235397.1 Glycine max strain Williams 82 clone GM_WBb0119C05, complete sequence. | |||
GenBank | AC235834 | 1e-113 | AC235834.2 Glycine max clone GM_WBb0038B12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020238043.1 | 0.0 | protein CUP-SHAPED COTYLEDON 2 | ||||
Swissprot | O04017 | 1e-118 | NAC98_ARATH; Protein CUP-SHAPED COTYLEDON 2 | ||||
TrEMBL | A0A151RND0 | 0.0 | A0A151RND0_CAJCA; Protein CUP-SHAPED COTYLEDON 2 | ||||
STRING | GLYMA12G26190.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3689 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53950.1 | 1e-104 | NAC family protein |