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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_34606 | ||||||||
Common Name | KK1_032989 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 228aa MW: 26476.8 Da PI: 7.7229 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.5 | 1.3e-12 | 66 | 108 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 W+++E+ l++ + + +G+g+Wk Iar++g ++ + q+ s+ qk+ C.cajan_34606 66 WSKDEHRLFLVGLEIFGKGNWKNIARYIG-TKKASQVSSHAQKF 108 *****************************.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.204 | 58 | 113 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.57E-14 | 59 | 113 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.4E-13 | 61 | 111 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.1E-8 | 62 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-8 | 64 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.74E-10 | 66 | 109 | No hit | No description |
Pfam | PF00249 | 7.2E-10 | 66 | 107 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MDEFWSYLDH SPPMNEFSPM LMQDNTEKLI VGETSNVIHT ESDIIKLLND SNNSSISIPR 60 KKYIHWSKDE HRLFLVGLEI FGKGNWKNIA RYIGTKKASQ VSSHAQKFFN RLNASKESKK 120 RKSIHDITLQ DIDTRIPQHI YESNGVLPTP NFAMQAQNMQ ETQYVSQDSQ LNPPSNVHHP 180 MEEYKYFNNK EPQHIEHHNS ISCLTLAVQQ FHKCNKDNYC CPSTSKNI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_34606 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A151RSE7 | 1e-170 | A0A151RSE7_CAJCA; Myb-like protein J |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13860 | 4 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 6e-24 | MYB family protein |