PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_33491
Common NameKK1_033799
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family TALE
Protein Properties Length: 314aa    MW: 35410 Da    PI: 4.8065
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_33491genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.45.9e-09236291355
                    --SS--HHHHHHHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
       Homeobox   3 kRttftkeqleeLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                    kR ++ k+  ++L +  +   k +yp++ ++  LAk++gL+++q+ +WF N+R ++
  C.cajan_33491 236 KRGKLPKDARQTLLQWWNihyKWPYPTEGDKIALAKSTGLDQKQINNWFINQRKRH 291
                    555555566666655555443679*****************************885 PP
2ELK32.22.4e-11211232122
            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                    ELK++LlrK+++++gsLk EFs
  C.cajan_33491 211 ELKDRLLRKFGSHIGSLKMEFS 232
                    9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.8E-2374118IPR005540KNOX1
PfamPF037901.5E-2176116IPR005540KNOX1
SMARTSM012565.3E-28124175IPR005541KNOX2
PfamPF037918.0E-26128174IPR005541KNOX2
PROSITE profilePS5121310.004211231IPR005539ELK domain
SMARTSM011884.3E-6211232IPR005539ELK domain
PfamPF037897.3E-8211232IPR005539ELK domain
PROSITE profilePS5007112.94231294IPR001356Homeobox domain
SuperFamilySSF466897.27E-20232305IPR009057Homeodomain-like
SMARTSM003897.3E-14233298IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-28236295IPR009057Homeodomain-like
CDDcd000868.74E-13243295No hitNo description
PfamPF059203.1E-17251290IPR008422Homeobox KN domain
PROSITE patternPS000270269292IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEDEMYGVAT TAEYSEKALM TPENIFPAEY HSFLMSSGGR IPMFGSDEFL SAAVAEPYPS  60
VAAPEIQRQH DASSLIKARI ASHPHYPRLL EAYIDCQKVG APPEMACLLE EIRLENDVCK  120
MDVVSTCVGA DPELDEFMET YCDMLVKYKS DLTRPFDEAT TFLSKIETQL SDLCTGSSLP  180
TLSDDGGVSS EEGLSAGDGD AQDQLRGEDR ELKDRLLRKF GSHIGSLKME FSKKKKRGKL  240
PKDARQTLLQ WWNIHYKWPY PTEGDKIALA KSTGLDQKQI NNWFINQRKR HWKPSENMPF  300
SMVDGLTGRF LTDE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232239KKKKRGKL
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_33491
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020237469.10.0homeobox protein knotted-1-like 6
RefseqXP_029130937.10.0homeobox protein knotted-1-like 6
SwissprotQ84JS61e-141KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A151RQ680.0A0A151RQ68_CAJCA; Homeobox protein knotted-1-like 6
STRINGXP_007153755.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-143KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]