PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_32117 | ||||||||
Common Name | KK1_034137 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | GATA | ||||||||
Protein Properties | Length: 304aa MW: 33458.9 Da PI: 6.6735 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 48.3 | 1.4e-15 | 226 | 262 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp++Rrgp+g++tLCnaCGl+++ kg+ C.cajan_32117 226 CRHCGISEkcTPMMRRGPEGPRTLCNACGLMWANKGT 262 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 2.3E-11 | 82 | 117 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 14.606 | 82 | 117 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.6E-12 | 87 | 116 | IPR010399 | Tify domain |
Pfam | PF06203 | 6.5E-16 | 150 | 192 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 13.205 | 150 | 192 | IPR010402 | CCT domain |
SMART | SM00401 | 4.5E-13 | 220 | 273 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 8.787 | 220 | 268 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.62E-12 | 221 | 282 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.3E-15 | 224 | 267 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.66E-13 | 225 | 285 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 226 | 253 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.8E-13 | 226 | 262 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MDGIHGGDSR MQMSDGQHPI HVPYVQEHEH HGLHHMSNGN GIDDDQNDGA DTNCGGSESV 60 EGEVPSNHGN LHDNHTVMMD QGGDGGDQLT LSFQGQVYVF DSVSPEKVQA VLLLLGGREI 120 PPTMPSIPVS PHNNNRGFTG TPQKFSVPQR LASLIRFREK RKERNFDKKI RYTVRKEVAL 180 RMQRNKGQFT SSKSNHDESA PTGTNWGTNE NWTADNNGSQ QQDIVCRHCG ISEKCTPMMR 240 RGPEGPRTLC NACGLMWANK GTLRDLSRTA PLSGHNSSLI KNENKSLEAN QIVDRVAGEA 300 DDSS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00198 | DAP | Transfer from AT1G51600 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_32117 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 1e-133 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020237768.1 | 0.0 | GATA transcription factor 28 | ||||
Swissprot | Q8H1G0 | 1e-134 | GAT28_ARATH; GATA transcription factor 28 | ||||
TrEMBL | A0A151RPA5 | 0.0 | A0A151RPA5_CAJCA; GATA transcription factor 25 | ||||
STRING | GLYMA08G23720.2 | 0.0 | (Glycine max) | ||||
STRING | XP_007142122.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13651 | 23 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 1e-115 | ZIM-LIKE 2 |