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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_32026 | ||||||||
Common Name | KK1_033975 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 338aa MW: 39490 Da PI: 6.9377 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 42.7 | 7e-14 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i n+s r++++ kR++ +lKK eE+S+ C++e++ i++ s C.cajan_32026 10 FIANDSERKISYRKRKKSVLKKTEEISTICGVEACAIVYNS 50 899**********************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.9E-16 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.432 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 9.83E-23 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 7.06E-20 | 3 | 96 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-5 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.9E-12 | 10 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-5 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MARKKVKLAF IANDSERKIS YRKRKKSVLK KTEEISTICG VEACAIVYNS SYDPEPQVWP 60 SESGVQQVLR KFRSLPEWEQ MRNMVQQENF IRQSIHKQRE KVKKLAKDNK QKEMTMLMYQ 120 CLDAGRVELN NNVNVADLKD LSSVIEQKLQ SITTKLEMLN VNEITSYQPQ MQEPAHQHQM 180 QMQTPVPYQP QIGTPAYQQQ IQMQIPQNQQ QIQMQIPQNH QQIQMQIPAY QPQPQMQIQT 240 QAYQSQIETP TYQQQMQMLQ TPAYQPEVQR QTTTYVPQNE GPSNQPQMQT RALAVEPEEM 300 TLLNMNTNPM QSQWFMDTFL IGNGDETMFP PFGDDLPF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKLAFIANDSERKISYRKRK |
2 | 21 | 25 | RKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_32026 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020237626.1 | 0.0 | MADS-box transcription factor PHERES 2 | ||||
TrEMBL | A0A151RPN5 | 0.0 | A0A151RPN5_CAJCA; Agamous-like MADS-box protein AGL80 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF452 | 33 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 7e-46 | AGAMOUS-like 80 |