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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
C.cajan_31496 |
| Common Name | KK1_030848 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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| Family |
ARF |
| Protein Properties |
Length: 491aa MW: 54081.3 Da PI: 5.8911 |
| Description |
ARF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| C.cajan_31496 | genome | IIPG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 73.5 | 2.5e-23 | 70 | 171 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
f k+ltpsd+++ g +++p+ +a+++ ++ + l+++d +g W++++iyr++++r+++t+GW++Fv+ ++L +gD+vvF+ ++se
C.cajan_31496 70 FSKILTPSDANNGGGFSVPRYCADSIfppldfrADPPYQ--YLSITDVHGVAWRFRHIYRGTPRRHLFTTGWSKFVNHKKLVAGDSVVFM--RDSE 161
88*****************************96444444..79***********************************************..5689 PP
E..EEEEE-S CS
B3 90 felvvkvfrk 99
++ v+++r+
C.cajan_31496 162 GRVSVGIRRA 171
999****996 PP
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| 2 | Auxin_resp | 69.9 | 7.7e-24 | 207 | 284 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82
aa+aa+ +++FevvY+Pra+ ++Fvv++e v +a+k + G+R+k+ +etedss+ ++ +G+v++ ++d+ +Wr+L
C.cajan_31496 207 AAEAAARNEPFEVVYYPRAGFADFVVSAEVVDEAMKYAWVGGTRVKIGIETEDSSRMTWfQGMVASACATDN-----GPWRML 284
7899***************************************************************99887.....555555 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009734 | Biological Process | auxin-activated signaling pathway |
| GO:0010208 | Biological Process | pollen wall assembly |
| GO:0048830 | Biological Process | adventitious root development |
| GO:0052543 | Biological Process | callose deposition in cell wall |
| GO:0005634 | Cellular Component | nucleus |
| GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 491 aa
Download sequence Send
to blast |
MEHASPSHSP SLEPLLRSLP FVPCHVSSID LLADPYSDEV FAKLTLTPFP FHHNNANDHQ 60
NDHQSDVVSF SKILTPSDAN NGGGFSVPRY CADSIFPPLD FRADPPYQYL SITDVHGVAW 120
RFRHIYRGTP RRHLFTTGWS KFVNHKKLVA GDSVVFMRDS EGRVSVGIRR AARFAMKSEA 180
VEVEAAEGAG FSRSTTGRVS PKAVAAAAEA AARNEPFEVV YYPRAGFADF VVSAEVVDEA 240
MKYAWVGGTR VKIGIETEDS SRMTWFQGMV ASACATDNGP WRMLQVIWDE PEVLQNAKRV 300
SPWQVELASP TLALHTVFPP TKRFRADQGS GLLGEREGDP FPMSGLFPNS TMGHLNKKMF 360
CYDTFPAGMQ GARHDLFSAT NFSNFLNDNS YLYLGSSSLV NNTVQRLETV STELNIGSSQ 420
SDDLSPHSQS SLHSSCTEFT GTHNSNTKVG SGSILLFGKI IHPVEYDLHD ADCVEEGDRS 480
KETEGSDNLL E
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| Functional Description ? help
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| Source |
Description |
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015036 | 1e-153 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
| Publications
? help Back to Top |
- Shi ZH, et al.
Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
PLoS ONE, 2015. 10(3): p. e0117317
[PMID:25822980] - de Lucas M, et al.
Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
Plant Cell, 2016. 28(10): p. 2616-2631
[PMID:27650334] - Wójcikowska B,Gaj MD
Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
Plant Cell Rep., 2017. 36(6): p. 843-858
[PMID:28255787] - Wang B, et al.
Fine regulation of ARF17 for anther development and pollen formation.
BMC Plant Biol., 2017. 17(1): p. 243
[PMID:29258431] - Wójcik AM,Nodine MD,Gaj MD
miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
Front Plant Sci, 2017. 8: p. 2024
[PMID:29321785] - Lin JS, et al.
MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
Front Plant Sci, 2018. 9: p. 68
[PMID:29449855]
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