PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_31437 | ||||||||
Common Name | KK1_034533 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | NAC | ||||||||
Protein Properties | Length: 412aa MW: 46175.7 Da PI: 5.8096 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 95.7 | 7.2e-30 | 79 | 220 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tksg 81 p+G++F P+d +l+ e+L++k+ + + ++++i++++ i++++P++Lp +k++ ++++fF+k+ ++yatg+rk+r+ ++ C.cajan_31437 79 PVGVKFVPSDVQLL-EHLAAKCCIGNrkphIFIHDFIPTLEgdqgICYTHPENLP-GAKKDGNSVHFFHKTVNAYATGQRKRRKihderglnEENV 172 89************.888888665553556333444555423345**********.55678899*******************8677777665589 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tg++k+v++ +g ++g kk++v+y +++ +k+ kt+Wvmh+y+l C.cajan_31437 173 RWHKTGRTKAVIE-DGVHKGFKKIMVLYvrSKKGSKPYKTNWVMHQYHL 220 9***********9.999***********6645666777*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-36 | 63 | 239 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.851 | 78 | 239 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-11 | 79 | 220 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MTFDGTVLMY DDGWTAACIG FFLIYESWLI DIGGFAKKVK NTTVSTTDQI KDFGTYRKCP 60 KCHYHNDNND VSHVWPGFPV GVKFVPSDVQ LLEHLAAKCC IGNRKPHIFI HDFIPTLEGD 120 QGICYTHPEN LPGAKKDGNS VHFFHKTVNA YATGQRKRRK IHDERGLNEE NVRWHKTGRT 180 KAVIEDGVHK GFKKIMVLYV RSKKGSKPYK TNWVMHQYHL GSEEDEKDGE YVVSKVFYQQ 240 HKKNEENPVV EDSKIAAQTG PRTPIPNPPT RPCTGKSDDN FDENELLPFI QDAKPIPGGS 300 HTPPSDVQDE DNKQDPACLA GEPQADSDFD GLDDILLCKE MLGSSALFTD SELTSTIKGD 360 SIKFVAPGNN NDHASYGISI LDTLELDSPP DFDLSNLQFG SQDSTLQWID KL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_31437 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015643 | 1e-157 | AP015643.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_0599, complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020238054.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 4e-75 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A151RN81 | 0.0 | A0A151RN81_CAJCA; NAC domain-containing protein 8 | ||||
STRING | GLYMA05G09110.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7572 | 30 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01600.1 | 1e-86 | NAC domain containing protein 44 |