PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_31364 | ||||||||
Common Name | KK1_030345 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | LBD | ||||||||
Protein Properties | Length: 175aa MW: 19406.8 Da PI: 6.7841 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 61.9 | 1.6e-19 | 2 | 74 | 30 | 101 |
DUF260 30 fanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 fa+vh++FGa+nv +++k+l++ + r+ a+++lvy+Aear+rdP yG+vg+i++l+q+ ++++++l ++k++l C.cajan_31364 2 FACVHHVFGAANVGNVIKSLSDPQlRKLAVNTLVYQAEARVRDPTYGVVGHIMELEQRHRKVQEDLMRAKAQL 74 89******************77666*****************************************9999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 13.716 | 1 | 74 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-17 | 2 | 71 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MFACVHHVFG AANVGNVIKS LSDPQLRKLA VNTLVYQAEA RVRDPTYGVV GHIMELEQRH 60 RKVQEDLMRA KAQLAQYLGP EGMRKEFSLC LGASSKGKNK CDETPEPHMS SFRRLCTDSD 120 VEMWDPFPPW ETFDDTQSGE KLSSDLGENN VGSSSLQGHG DKKGKRPADF PSTPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-13 | 2 | 77 | 40 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-13 | 2 | 77 | 40 | 114 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_31364 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020234457.1 | 1e-130 | LOB domain-containing protein 21 | ||||
TrEMBL | A0A151RZR9 | 1e-129 | A0A151RZR9_CAJCA; LOB domain-containing protein 36 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF19459 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 7e-22 | ASYMMETRIC LEAVES 2-like 1 |