PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_31230
Common NameKK1_029794
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family LBD
Protein Properties Length: 188aa    MW: 20581.9 Da    PI: 5.1086
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_31230genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.22.7e-387105198
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                    +C aCk+lrrkCa+dCv+apyf  +q + +fa+vhk++Gasnv++ll++lp ++r+da+ ++ yeA ar++dP+yG+v++i +lqqq+++l++e++
  C.cajan_31230   7 SCGACKFLRRKCATDCVFAPYFSYDQaSTHFAAVHKIYGASNVSRLLSHLPIQNRSDAAITISYEALARMQDPIYGCVAHIYALQQQVASLQEEID 102
                    6***********************99779*****************************************************************98 PP

         DUF260  96 llk 98 
                    +l+
  C.cajan_31230 103 TLG 105
                    875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.3666108IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-367104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MTGLGSSCGA CKFLRRKCAT DCVFAPYFSY DQASTHFAAV HKIYGASNVS RLLSHLPIQN  60
RSDAAITISY EALARMQDPI YGCVAHIYAL QQQVASLQEE IDTLGSLMTN STISVVNCDS  120
VQAPKNSNNG TQYNILQHDA TRTQYCQNNN LANFLSQEGS ATVYQSFDSQ MDMELPSAHV  180
EEPSFGDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-3631027105LOB family transfactor Ramosa2.1
5ly0_B4e-3631027105LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_31230
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-110AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029130334.11e-139LOB domain-containing protein 33
SwissprotQ9LHS82e-56LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A151S1181e-138A0A151S118_CAJCA; LOB domain-containing protein 33
STRINGGLYMA14G07260.21e-117(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91963242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.17e-59LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]