![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | C.cajan_31201 | ||||||||
Common Name | KK1_030452 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 369aa MW: 40222.4 Da PI: 7.5776 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 112.4 | 6.3e-35 | 70 | 206 | 2 | 114 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+ qqa+pa++++tgt++++a+++ + s +ss+s+ s + C.cajan_31201 70 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIDL--QQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSVPsqlrsnyf 163 789*********************************************5..******************999877777777775555555556677 PP TCP 89 .............................kaaksaakskksqksaasalnlakes 114 + ++ + ++++e C.cajan_31201 164 nsnfslqprrslflensntsstllnfqsnNPISTG------------MFQPKHEL 206 77777777777777754444444444433222222............22222222 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.5E-36 | 74 | 237 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 20.35 | 76 | 128 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 369 aa Download sequence Send to blast |
MEGGDDFQNH HHRHHHHRQN FPFQLLEKKE DQDPPSCSTS SPYPSLAISS AEPSNQLLPT 60 PSEPSPKKPP PKRTSTKDRH TKVDGRGRRI RMPALCAARV FQLTRELGHK SDGETIDLQQ 120 AEPAVIAATG TGTIPANFTS LNISLRSSGS SMSVPSQLRS NYFNSNFSLQ PRRSLFLENS 180 NTSSTLLNFQ SNNPISTGMF QPKHELRESS SLDLSSENNE EGLGRKRRPS EQDLSSAMQH 240 QVGSYLMQSS TSGTIPASHA QIPANIWMVA NSNSQGVSGE APLWTFPGVS NNALYRGTMS 300 SGLHFMNFPT PMTLLPGQQL GSSIGGGNMN EGHLSMLSGL NPYRTVIGVS ESQASESQSH 360 HGGSEDRHE |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | C.cajan_31201 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_029130429.1 | 0.0 | transcription factor TCP14 | ||||
Swissprot | Q93Z00 | 3e-55 | TCP14_ARATH; Transcription factor TCP14 | ||||
TrEMBL | A0A151RZB5 | 0.0 | A0A151RZB5_CAJCA; Transcription factor TCP14 | ||||
STRING | XP_007138192.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2120 | 32 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G58100.1 | 2e-33 | TCP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|