PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | C.cajan_30824 | ||||||||
Common Name | KK1_034327 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 150aa MW: 17333.1 Da PI: 5.2061 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38 | 3.8e-12 | 64 | 105 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W t+E+ ll+++++++G g+W+ + +++g +++ qc+++++ C.cajan_30824 64 DWNTDEEMLLLEGIEMYGFGNWNEVTEYVG-TKSKFQCIDHYN 105 5*****************************.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00291 | 7.4E-10 | 1 | 46 | IPR000433 | Zinc finger, ZZ-type |
CDD | cd02335 | 3.04E-22 | 5 | 53 | No hit | No description |
PROSITE profile | PS50135 | 10.587 | 5 | 48 | IPR000433 | Zinc finger, ZZ-type |
Pfam | PF00569 | 1.3E-9 | 5 | 45 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF57850 | 3.18E-14 | 5 | 68 | No hit | No description |
PROSITE pattern | PS01357 | 0 | 7 | 34 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF46689 | 6.06E-13 | 57 | 111 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 20.224 | 60 | 112 | IPR017884 | SANT domain |
SMART | SM00717 | 4.5E-9 | 61 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-12 | 64 | 105 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.67E-11 | 65 | 105 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.7E-8 | 65 | 107 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 150 aa Download sequence Send to blast |
KVSLYHCNYC NKDISGKIRI KCVLCQDFDL CIECFSVGAE VTPHKSNHPY RTMDNLSFPL 60 MCPDWNTDEE MLLLEGIEMY GFGNWNEVTE YVGTKSKFQC IDHYNAVYMN SPCFPLPDLS 120 HVMGKSREEL FAMVKGREVM KDIVNILQIL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6cw2_C | 6e-35 | 5 | 120 | 5 | 120 | Transcriptional adapter 2 |
6cw3_E | 5e-35 | 5 | 120 | 5 | 120 | Transcriptional adapter 2 |
6cw3_G | 5e-35 | 5 | 120 | 5 | 120 | Transcriptional adapter 2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Required for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | C.cajan_30824 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 2e-55 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020237926.1 | 1e-104 | transcriptional adapter ADA2a | ||||
Swissprot | Q75LL6 | 8e-83 | TADA2_ORYSJ; Transcriptional adapter ADA2 | ||||
TrEMBL | A0A151RNP5 | 1e-109 | A0A151RNP5_CAJCA; Transcriptional adapter ADA2 (Fragment) | ||||
STRING | GLYMA13G11200.2 | 5e-93 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1537 | 17 | 26 |
Publications ? help Back to Top | |||
---|---|---|---|
|