PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_30684 | ||||||||
Common Name | KK1_033323 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 262aa MW: 29638.7 Da PI: 9.8486 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 41.1 | 6.4e-13 | 1 | 108 | 1 | 90 |
GAGA_bind 1 mdddgsre..rnkg.yye..............pa.aslkenlglqlmssiaerdaki..rernlalsekkaavaerdmaflqrdkalaernkalve 76 mdd ++e r+k yy+ ++ ++l +++++ s++aer+a+i e ++a+sek++a+a+rd a qrd+a+a+r++al+e C.cajan_30684 1 MDDGRQHEnsRHKMdYYRgahslwntdsqhqvKEpNALV--MNKKIRSIMAERQAAIleLELEAAISEKNEALAARDAAIRQRDEAIAQRDHALLE 94 666655555799988999999999999877663335666..99**************77677889******************************* PP GAGA_bind 77 rdnkllalllvens 90 rdn+l+al++v+ C.cajan_30684 95 RDNALAALQTVKSH 108 *********98765 PP | |||||||
2 | GAGA_bind | 263.3 | 1.3e-80 | 107 | 262 | 144 | 301 |
GAGA_bind 144 akekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCttti 239 ++++kk+k ++ +++ +k+ k+kk +e+ +++ ++e+ ++ ++e++ +d++ln v++De+ +PvPvC+CtG++rqCYkWGnGGWqS+CCttt+ C.cajan_30684 107 SHQTKKTKDNKVINSKASKTPCKVKKMGEDLNRQASSEG--TKIRSEWDRQDVGLNLVAFDETIMPVPVCTCTGVPRQCYKWGNGGWQSSCCTTTL 200 445555565666666666666699999999988888888..67***************************************************** PP GAGA_bind 240 SvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 S+yPLP+ +++r+aRi+grKmS+++f++lL++La+eG+dls p+DLk++WA+HGtn+++ti+ C.cajan_30684 201 SMYPLPQLPNKRHARIGGRKMSGSVFTRLLSRLASEGHDLSIPLDLKEYWARHGTNRYITIK 262 *************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 1.5E-123 | 1 | 262 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 4.5E-9 | 1 | 114 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 1.3E-80 | 102 | 262 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0050793 | Biological Process | regulation of developmental process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MDDGRQHENS RHKMDYYRGA HSLWNTDSQH QVKEPNALVM NKKIRSIMAE RQAAILELEL 60 EAAISEKNEA LAARDAAIRQ RDEAIAQRDH ALLERDNALA ALQTVKSHQT KKTKDNKVIN 120 SKASKTPCKV KKMGEDLNRQ ASSEGTKIRS EWDRQDVGLN LVAFDETIMP VPVCTCTGVP 180 RQCYKWGNGG WQSSCCTTTL SMYPLPQLPN KRHARIGGRK MSGSVFTRLL SRLASEGHDL 240 SIPLDLKEYW ARHGTNRYIT IK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_30684 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-156 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020237057.1 | 1e-180 | protein BASIC PENTACYSTEINE4 | ||||
Refseq | XP_020237061.1 | 1e-180 | protein BASIC PENTACYSTEINE4 | ||||
Refseq | XP_029130851.1 | 1e-180 | protein BASIC PENTACYSTEINE4 | ||||
Refseq | XP_029130852.1 | 1e-180 | protein BASIC PENTACYSTEINE4 | ||||
Refseq | XP_029130853.1 | 1e-180 | protein BASIC PENTACYSTEINE4 | ||||
Swissprot | Q8S8C6 | 1e-118 | BPC4_ARATH; Protein BASIC PENTACYSTEINE4 | ||||
TrEMBL | A0A151RRJ6 | 0.0 | A0A151RRJ6_CAJCA; Uncharacterized protein | ||||
STRING | GLYMA05G38430.5 | 1e-172 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6974 | 33 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21240.2 | 1e-116 | basic pentacysteine 4 |