PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_30427
Common NameKK1_034773
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family B3
Protein Properties Length: 554aa    MW: 62095.8 Da    PI: 8.8086
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_30427genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3612.1e-1920106799
                    .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     s++++s+rl +p+ f+ +++g + +s  ++l+ +sg++W v+l   k+++  ++  GW+ Fv +++L+ gD +vF+++g+  f  +v+vf++
  C.cajan_30427  20 FSSAFSSHRLKIPNGFVCRMEGRTYGS--VSLTGPSGNTWVVQL--IKQDNDLFFHHGWSAFVADHRLECGDLLVFRYEGQLHF--TVQVFDN 106
                    3999************99999997775..***************..9******************************9986555..9999986 PP
2B348.71.3e-15225317196
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                    f+ ++++ +v+ s  l +p +f  +h   ++++++++l +++g+ W+v+    ++   +++l +GW  Fv+ n++k+gD+++F+l+++ e   +v+
  C.cajan_30427 225 FVRIMKSFNVSGSYTLNIPYQFSMAHL--PNCKIKVILHNLKGEHWTVNSVPtTRVHTSHTLCGGWMAFVRGNNIKVGDICIFELVHECEL--RVH 316
                    556677778888899*******98996..46999***************954566666799************************997666..454 PP

                    E CS
             B3  96 v 96 
                    +
  C.cajan_30427 317 I 317
                    4 PP
3B3505.3e-16447535190
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                    f+k++++ +v+ s  l +p +f ++h   ++ +++++l++++g+ W+v+   + k+++ +++ +GW  Fv++n+++ gD+++F+l+ + e 
  C.cajan_30427 447 FVKIMKKFNVSGSYTLKIPYQFSAAHL--PTYKTEVMLRNSRGECWTVNSVPDAKGRTvHTFCGGWMAFVRDNDINFGDTCIFELVAQCEM 535
                    89999999***************9994..334569***************77666666799***********************9875443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.37E-2110109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.3E-2212109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.88814107IPR003340B3 DNA binding domain
CDDcd100175.18E-1714105No hitNo description
PfamPF023622.3E-1620106IPR003340B3 DNA binding domain
SMARTSM010197.7E-1020107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-21216318IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-23218319IPR015300DNA-binding pseudobarrel domain
CDDcd100177.57E-19223317No hitNo description
PfamPF023623.0E-12225317IPR003340B3 DNA binding domain
PROSITE profilePS5086312.633225321IPR003340B3 DNA binding domain
SMARTSM010191.7E-10225323IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.2E-22439540IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-23440541IPR015300DNA-binding pseudobarrel domain
CDDcd100176.59E-18445539No hitNo description
PROSITE profilePS5086312.774447543IPR003340B3 DNA binding domain
PfamPF023622.3E-13447534IPR003340B3 DNA binding domain
SMARTSM010192.0E-11447543IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MGCECGGKLN VRRPHFYEVF SSAFSSHRLK IPNGFVCRME GRTYGSVSLT GPSGNTWVVQ  60
LIKQDNDLFF HHGWSAFVAD HRLECGDLLV FRYEGQLHFT VQVFDNDACE KEAAFHSECS  120
QNSCDFDNIR GQKRDTQENA SLDIVGESAS KKMRGSTNEN QEIELGIVVK ELPRYDVVRP  180
INASTMYRSG KEDDHYVLSG VSLSNVSAHD EKKVAQSFTS SFPYFVRIMK SFNVSGSYTL  240
NIPYQFSMAH LPNCKIKVIL HNLKGEHWTV NSVPTTRVHT SHTLCGGWMA FVRGNNIKVG  300
DICIFELVHE CELRVHIAGV GKDGLDCQVG KVDISRFSAG HAVTSRYMAT NPKVTPKCIR  360
KVDLSEKKWS KIGQETVLSV DMKKSVRASN TSKKMGLSKA AHKKLAVQRR HRVEDELSSQ  420
AKAGLRMLFA LDEQRVAQAF TSPFPSFVKI MKKFNVSGSY TLKIPYQFSA AHLPTYKTEV  480
MLRNSRGECW TVNSVPDAKG RTVHTFCGGW MAFVRDNDIN FGDTCIFELV AQCEMQVYIS  540
GVGKEGLDHQ VAKT
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_30427
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-102AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020238245.10.0B3 domain-containing protein Os11g0197600
TrEMBLA0A151RMQ90.0A0A151RMQ9_CAJCA; B3 domain-containing protein Os01g0723500 family
STRINGGLYMA14G08641.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114703238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-23B3 family protein