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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_30414 | ||||||||
Common Name | KK1_034760 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB | ||||||||
Protein Properties | Length: 153aa MW: 17563.8 Da PI: 11.5788 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.7 | 1.1e-17 | 23 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l +v+ +G+++W++I+r++ gR++k+c++rw + C.cajan_30414 23 KGPWSAEEDRILTWLVEAHGPRNWALISRHIK-GRSAKSCRLRWCNQ 68 79*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 52.2 | 1.4e-16 | 77 | 117 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++t Ede +++a++++G++ W+tIar ++ gRt++ +k++w+ C.cajan_30414 77 PFSTREDEVILHAHARFGNK-WATIARLLP-GRTDNAVKNHWN 117 79******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.598 | 18 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.09E-30 | 21 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-15 | 22 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-16 | 23 | 68 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-23 | 24 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.38E-13 | 25 | 67 | No hit | No description |
SMART | SM00717 | 4.2E-13 | 74 | 122 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.557 | 75 | 124 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-21 | 77 | 123 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.33E-9 | 77 | 120 | No hit | No description |
Pfam | PF00249 | 2.3E-13 | 77 | 117 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MKPSSSSSPR PNNNNNNNCY RIKGPWSAEE DRILTWLVEA HGPRNWALIS RHIKGRSAKS 60 CRLRWCNQLS PAVEHRPFST REDEVILHAH ARFGNKWATI ARLLPGRTDN AVKNHWNATL 120 KRRAPQRRRF ATERFEDDTF TALTLAPPGS FGP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-39 | 22 | 124 | 3 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-38 | 22 | 124 | 57 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-38 | 22 | 124 | 57 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-39 | 22 | 124 | 3 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 4e-39 | 22 | 124 | 3 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_30414 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020238247.1 | 1e-110 | transcription factor MYB73 | ||||
Swissprot | O23160 | 3e-54 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A151RMH3 | 1e-108 | A0A151RMH3_CAJCA; Transcription factor MYB44 | ||||
STRING | GLYMA17G36370.2 | 4e-74 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5074 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 4e-56 | myb domain protein 73 |
Publications ? help Back to Top | |||
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