PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_30318 | ||||||||
Common Name | KK1_029902 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | GATA | ||||||||
Protein Properties | Length: 353aa MW: 38706 Da PI: 6.914 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.7 | 1.6e-18 | 267 | 301 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l C.cajan_30318 267 CSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRL 301 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.8E-16 | 261 | 315 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.189 | 261 | 297 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.66E-14 | 263 | 323 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.5E-14 | 265 | 299 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.28E-14 | 266 | 314 | No hit | No description |
Pfam | PF00320 | 2.0E-16 | 267 | 301 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 267 | 292 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MLYQTQHLPL FQFHPFTSST TPQLSTPPSS LTPLLLSQET ETEMECLEGA LKSSLRKDTA 60 LKVSPQTLLE ELAAPNVQNV VASCDDFFVD DLLDFSLLEK EEPDNHTHDS TSVSPKRHNH 120 EIHNNNHNHN PSFNDHFNSE LTVPAEDVAD LEWLSHFVED SFAEYSVSFP TVTVTESLSE 180 RAPEPGNTGF AFKTPVPAKA RSKRTRTGVR VWPLKSPSFT DTSSTLTSSS SSSSSSSPSS 240 PSRICEEKRA KKRAAADGGA AQAARRCSHC GVQKTPQWRT GPLGAKTLCN ACGVRYKSGR 300 LLPEYRPACS PTFSSELHSN HHRKVLEMRR KKEVVVEPDT GSGSGSATLV PGF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_30318 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020234059.1 | 0.0 | GATA transcription factor 5 | ||||
Swissprot | Q9FH57 | 3e-71 | GATA5_ARATH; GATA transcription factor 5 | ||||
TrEMBL | A0A151S0V8 | 0.0 | A0A151S0V8_CAJCA; GATA transcription factor | ||||
STRING | XP_007156103.1 | 1e-135 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1108 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36240.1 | 2e-47 | GATA transcription factor 7 |