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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_29891 | ||||||||
Common Name | KK1_032145 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 231aa MW: 26237.6 Da PI: 8.0756 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.2 | 4.3e-14 | 80 | 124 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + k++G+g+W+ I++ + + Rt+ q+ s+ qky C.cajan_29891 80 PWTEEEHRQFLLGLKKYGKGDWRNISKNFVTSRTPTQVASHAQKY 124 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 6.335 | 1 | 21 | IPR017884 | SANT domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-13 | 71 | 127 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.592 | 73 | 129 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.35E-17 | 75 | 128 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.0E-17 | 76 | 128 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 6.2E-13 | 77 | 127 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.00E-11 | 80 | 124 | No hit | No description |
Pfam | PF00249 | 6.8E-12 | 80 | 124 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MIPGKTVGDV IKQYRELEED VCVIEAGLVP VPGYTAAISF TLEWDDNNQG YDEFKQFCSV 60 GGKRGASTRP SEHERKKGVP WTEEEHRQFL LGLKKYGKGD WRNISKNFVT SRTPTQVASH 120 AQKYYIRQLT GGKDKRRSSI HDITMVNLQE TKSPSSDTTR PSSPLQNQKL SSMLKQEYEW 180 KLACEDMPIV FNSTNGSMFM ATPLHGISSY ESRPQEHDLL GQSPWMPVFT L |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_29891 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-149 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020236097.1 | 1e-174 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 5e-84 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A151RUQ1 | 1e-174 | A0A151RUQ1_CAJCA; Myb-like protein J | ||||
STRING | GLYMA18G42530.1 | 1e-152 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF466 | 34 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 3e-79 | MYB family protein |
Publications ? help Back to Top | |||
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