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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_29811 | ||||||||
Common Name | KK1_031115 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 250aa MW: 28083.8 Da PI: 5.4415 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.1 | 1e-08 | 196 | 224 | 1 | 29 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 r +W++eEd +l av+++G g+W+ a+ C.cajan_29811 196 RSAWSEEEDMQLRAAVQKWGEGNWAHMAK 224 789**********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.201 | 191 | 239 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-9 | 193 | 229 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.0E-7 | 193 | 237 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0048 | 195 | 243 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-7 | 196 | 225 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 5.01E-9 | 199 | 237 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MTKKQTKVPF SKEDAASLLQ RYDAETVLVM LQELANHPHS KFDWEELVAK TTTGISDARE 60 YQMLWRHIAY GHSFTENENE DAPLDDDSDL ECEREALPRV NKETAAACVK VMISSFKLNE 120 CISTSSVIQA PLTINVPVLD STTIAKESSQ SSNLRTQETE IIFPVTVKRK PLPPNIRAVE 180 TGGGLVSSDT SIKKKRSAWS EEEDMQLRAA VQKWGEGNWA HMAKRDDFPI KRSTSQLCKV 240 IFPALNCELI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_29811 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020235194.1 | 1e-178 | uncharacterized protein LOC109815025 isoform X2 | ||||
TrEMBL | A0A151RXH8 | 0.0 | A0A151RXH8_CAJCA; Uncharacterized protein | ||||
STRING | GLYMA02G37841.1 | 1e-110 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3122 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.1 | 6e-54 | MYB_related family protein |