PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_29446 | ||||||||
Common Name | KK1_033401 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | Trihelix | ||||||||
Protein Properties | Length: 267aa MW: 29958.8 Da PI: 10.2622 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 42.7 | 1.5e-13 | 28 | 114 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +Liea e++ +l+rg ++W+ev++++ +++ +r+ +qCk++++ l+k+yk +k++ ++ +s + +p+f++l+ C.cajan_29446 28 CWSEEATFTLIEAWGERHLELSRG----KHWQEVADAVnarhghVSTKARRTDVQCKNRIDTLKKKYKIEKARVSDS-GDSATAWPFFRRLD 114 7********************999....9*********99888888899***********************99985.677779*****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 5.4E-24 | 26 | 115 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.5E-4 | 29 | 89 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MDSTAGAPSL AAAPPSSRPS PFPGREDCWS EEATFTLIEA WGERHLELSR GKHWQEVADA 60 VNARHGHVST KARRTDVQCK NRIDTLKKKY KIEKARVSDS GDSATAWPFF RRLDFLIGDT 120 FPAKKSSPPA TSSDRRSTPP AKSPAWSLTP VLPRSGSQKP SPPSPESPED ENSNGLKSSS 180 GSEKGVMKKK RRRDCGELGY REVAEALVRF GEIYERVEEQ KQRQMVELEK QRMQFAKDLE 240 CQRLKLFMET QVQLQKINRS KRASATG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 187 | 192 | KKKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_29446 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020237125.1 | 1e-170 | trihelix transcription factor ASIL2 | ||||
Swissprot | Q9LJG8 | 3e-32 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A151RRB4 | 0.0 | A0A151RRB4_CAJCA; Uncharacterized protein | ||||
STRING | GLYMA13G36650.1 | 1e-133 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1887 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11100.1 | 1e-45 | sequence-specific DNA binding transcription factors |