PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_29418
Common NameKK1_029961
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB_related
Protein Properties Length: 449aa    MW: 49920.9 Da    PI: 8.1503
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_29418genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-1658102147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rWT eE++++++a k++G   W++I +++g ++t+ q++s+ qk+
    C.cajan_29418  58 RERWTDEEHKKFLEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 102
                      78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.05E-1652106IPR009057Homeodomain-like
PROSITE profilePS5129421.08253107IPR017930Myb domain
TIGRFAMsTIGR015578.7E-1756105IPR006447Myb domain, plants
SMARTSM007174.7E-1357105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-95898IPR009057Homeodomain-like
PfamPF002491.3E-1358101IPR001005SANT/Myb domain
CDDcd001673.55E-1060103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MQGQNAFTRS RGGLPVGDGI SLNSGVHSVA DISLHDQFSC GNDYALKVRK PYTITKQRER  60
WTDEEHKKFL EALKLYGRAW RRIEEHVGTK TAVQIRSHAQ KFFSKVVRES SGNSTALEES  120
IEIPPPRPKR KPIHPYPRKL VEIPKKEISN SEHPLRSNSL KSSDFGQENN SPKSVLSAIV  180
SETLGSSDSD TPTRSLSPVS STSGDPLNNF PLADPKTSFE EEGSPPSSAH DDQPLVKLEL  240
FHKERDSTKD DAAEESSGRT LKLFGTTLLV TDPCKPSSLT PEPCKPIPTA AMYLVQLQNG  300
CSNIAQGPAS IVPPRWTLPH NAPFMSLHKE PKGKHLYSNL GEYELKEVQK EGSWTDSNTS  360
SSFNDGDNNE KSDDQAKSVV HCFSKRDGQL DLLGHTPLSV TSSISELRVR PKTYGKGFVP  420
YKRCMAEREK PYSLISDEER EEKRIKLSL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_29418
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311810.0KT031181.1 Glycine max clone HN_CCL_152 MYB/HD-like transcription factor (Glyma02g40800.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020234150.10.0protein REVEILLE 1
TrEMBLA0A151S0K40.0A0A151S0K4_CAJCA; Myb-like protein G
STRINGXP_007141962.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29563372
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.17e-55MYB_related family protein