PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_29031

Common Name

KK1_027007

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

HD-ZIP

Protein Properties

Length: 214aa MW: 24889.1 Da PI: 6.8904

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_29031	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.1	7.3e-19	52	106	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++eql Le+ F ++++ +++ +LA +lgL+ rqV vWFqNrR ++k+ C.cajan_29031 52 KKRKLSPEQLSFLEQNFVDEHKLESQRKDRLALELGLDPRQVAVWFQNRRSRWKN 106 66799************************************************95 PP
2	HD-ZIP_I/II	109.4	2.5e-35	52	142	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkr+ls eq+++LE++F e+kLe++rK +la eLgl+prqvavWFqnrR R+k+k+lE++y++Lk+a+++ + e+++Le++v +L+e+l C.cajan_29031 52 KKRKLSPEQLSFLEQNFVDEHKLESQRKDRLALELGLDPRQVAVWFQNRRSRWKNKKLEEEYSKLKNAHETTMLEKCHLETQVLKLQEQLL 142 9**************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.568	47	107	IPR001356	Homeobox domain
SMART	SM00389	6.8E-18	50	111	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.6E-18	50	115	IPR009057	Homeodomain-like
Pfam	PF00046	3.1E-16	52	106	IPR001356	Homeobox domain
CDD	cd00086	2.07E-16	52	108	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.7E-20	54	114	IPR009057	Homeodomain-like
PRINTS	PR00031	4.0E-5	78	87	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	82	105	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.0E-5	87	103	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MNHAPIEDHM MLISQLYPDA FTQMTPQQGE NKPKRRRKKN KGGENGGVGS TKKRKLSPEQ 60 LSFLEQNFVD EHKLESQRKD RLALELGLDP RQVAVWFQNR RSRWKNKKLE EEYSKLKNAH 120 ETTMLEKCHL ETQVLKLQEQ LLEAKKEIQQ LLERGDRAPS NSSSSSHSLS QSMDQVVNPP 180 FLGEFSVEEY GDGDVFCIPE THYIDGMEWL NLYM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	32	39	PKRRRKKN
2	36	54	RKKNKGGENGGVGSTKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_29031

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020231535.1	1e-160	homeobox-leucine zipper protein ATHB-40
Swissprot	Q9ZU70	5e-73	ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBL	A0A151S8V8	1e-158	A0A151S8V8_CAJCA; Homeobox-leucine zipper protein ATHB-21
STRING	GLYMA02G06560.2	1e-100	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4789	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18550.1	3e-48	homeobox protein 21

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]