PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_28838

Common Name

KK1_030992

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

MYB_related

Protein Properties

Length: 237aa MW: 26850.6 Da PI: 10.6461

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_28838	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.8	3.7e-11	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G g W+tI R+ ++k++w++ C.cajan_28838 5 KQKWTAEEEAALKAGVVKHGAGKWRTILTDPEfsailRMRSNVDLKDKWRN 55 79*********************************9*********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.774	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	5.16E-15	2	66	IPR009057	Homeodomain-like
SMART	SM00717	4.1E-5	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-12	4	56	IPR009057	Homeodomain-like
Pfam	PF00249	2.1E-7	5	55	IPR001005	SANT/Myb domain
CDD	cd11660	1.64E-17	6	57	No hit	No description
SMART	SM00526	3.5E-7	104	182	IPR005818	Linker histone H1/H5, domain H15
PROSITE profile	PS51504	19.773	118	186	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	7.62E-13	124	178	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	6.7E-13	125	179	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	1.9E-9	127	178	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MGAPKQKWTA EEEAALKAGV VKHGAGKWRT ILTDPEFSAI LRMRSNVDLK DKWRNINVTA 60 IWGSRQKAKL ALKRSLPAPK IDNNHMALSM VVRHDEVLDT KPLAVSGGPL QSPNVKEQIS 120 RLVDNHILEA IVNMKEQKGS DKAAIISYIE EKYRSPPNLS KLLSTKLKHM VASGKIIKMI 180 KLMFSMVYLL INNDWKDAKQ YNLADMMKLC QSLANEPTRM HIAIRKKKLD YSSRSHI

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_28838

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020235039.1	1e-127	telomere repeat-binding factor 2 isoform X1
Swissprot	Q9FJW5	3e-60	TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBL	A0A151RXU7	1e-173	A0A151RXU7_CAJCA; Histone H1
STRING	XP_007155823.1	1e-120	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1453	33	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67580.2	1e-62	MYB_related family protein

Publications ? help Back to Top
Lee WK,Cho MH Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana. Nucleic Acids Res., 2016. 44(10): p. 4610-24 [PMID:26857545] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]