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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_28636 | ||||||||
Common Name | KK1_028577 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | B3 | ||||||||
Protein Properties | Length: 243aa MW: 28094.5 Da PI: 10.3287 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.5 | 6.4e-15 | 2 | 72 | 22 | 98 |
H.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 22 faeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f++++g+ s t+ l+ ++g +W+v+l +k g+++++kGW eFvk + L g ++F++dg s f +v +++ C.cajan_28636 2 FVSKYGK--YLSSTMFLKLPNGAEWRVNL--EKINGSVWFQKGWDEFVKHHSLAHGHLLIFRYDGASHF--HVLICD 72 6667763..47789***************..*********************************99999..999998 PP | |||||||
2 | B3 | 45 | 2e-14 | 137 | 233 | 4 | 97 |
E-..-HHHHTT-E.....E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS B3 4 vltpsdvlksgrl.....vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 +++ s+ ++++l +lpk ++++ ++ + + ++ rsW+vkl++ ++++ ++t+ W F+++n+LkegD ++F+l ++ ++ ++ C.cajan_28636 137 IMKASHLIRQCMLmhvmqYLPKGPLKSFIKS--G-EQYVMLLVGDRSWRVKLSHYHNKSSSYFTAQWPAFARDNDLKEGDACLFQLLNSsDDLVMK 229 5666666666666444456777777666322..2.2355555678*******99777777889**********************98765777777 PP EEEE CS B3 94 vkvf 97 v++ C.cajan_28636 230 VSIS 233 7765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.521 | 1 | 74 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.0E-12 | 2 | 72 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.7E-19 | 2 | 74 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.03E-14 | 2 | 72 | No hit | No description |
SuperFamily | SSF101936 | 2.55E-18 | 2 | 74 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0018 | 2 | 74 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-16 | 130 | 234 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.08E-15 | 132 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.59E-18 | 133 | 234 | No hit | No description |
Pfam | PF02362 | 4.2E-12 | 134 | 233 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.9E-8 | 134 | 236 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.828 | 179 | 236 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MFVSKYGKYL SSTMFLKLPN GAEWRVNLEK INGSVWFQKG WDEFVKHHSL AHGHLLIFRY 60 DGASHFHVLI CDMSGTEIEY PINKANHKRA RIKSEEIQHN KIRRTNGYNK KGKRKIEGSS 120 ISKYGVLEAV NTSFTVIMKA SHLIRQCMLM HVMQYLPKGP LKSFIKSGEQ YVMLLVGDRS 180 WRVKLSHYHN KSSSYFTAQW PAFARDNDLK EGDACLFQLL NSSDDLVMKV SISRYSSLKR 240 PIT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_28636 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028247196.1 | 8e-99 | B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A151S4J0 | 0.0 | A0A151S4J0_CAJCA; B3 domain-containing protein At1g49475 family | ||||
STRING | GLYMA08G44640.1 | 3e-98 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49475.1 | 7e-23 | B3 family protein |