PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_27838
Common NameKK1_026466
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family B3
Protein Properties Length: 459aa    MW: 52429.1 Da    PI: 9.8344
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_27838genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.33.8e-159851799
                   E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                    lpk f++++g     s  + l++++g +We+    +k++g++ l+kGWkeF+    L+ g  ++F+++g+s f   v++f++
  C.cajan_27838  9 KLPKAFTRKYGDG--ISNPVFLKSPDGTEWEIHW--NKHDGEICLQKGWKEFATFYSLDHGHLLLFEYKGTSHF--DVHIFDN 85
                   69********655..5566***************..**********************************9999..9999987 PP
2B346.66e-15191278397
                    EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
             B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                    k  +++ + +   l +p +f +++ +k  ++  + l+ ++grsW v +  +  +    + +GW++F+ +n+L++gD++vF+l+++ ++  ++v++f
  C.cajan_27838 191 KLVMKPPYINGYYLDIPPQFSKQYLKK--THAVVLLRVLDGRSWPVIY--SAPR----INGGWQKFALENNLNVGDVCVFELIQEiHSIAFTVSIF 278
                    5555666666667********999644..445788999**********..4444....99***********************9999998888887 PP
3B351.71.6e-16356453199
                    EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
             B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                    f  +lt+   lk+ ++ ++p +f++++  k ++   +++ + + ++W +k+ +  +  + +l++GW++F+ +n+L+ gD+++F+l++r+++ l ++
  C.cajan_27838 356 FTVTLTNQKRLKTpRCPYVPSEFVRKYFVKMKQ--NVMMIQFKKKVWPLKFAFHSCAVSGMLAGGWSSFATENELQHGDVCIFELVNREDTILDLH 449
                    5566777777777444599********655334..7***************998888889**************************9999999999 PP

                    EE-S CS
             B3  96 vfrk 99 
                    vfr+
  C.cajan_27838 450 VFRN 453
                    9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010193.7E-8186IPR003340B3 DNA binding domain
PROSITE profilePS5086313.31186IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-18886IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-18986IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-12985IPR003340B3 DNA binding domain
CDDcd100171.85E-141084No hitNo description
Gene3DG3DSA:2.40.330.101.5E-19183278IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-21184278IPR015300DNA-binding pseudobarrel domain
CDDcd100171.53E-17188279No hitNo description
PROSITE profilePS5086312.393189281IPR003340B3 DNA binding domain
SMARTSM010198.7E-11190281IPR003340B3 DNA binding domain
PfamPF023626.1E-13190279IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-19347455IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-18349454IPR015300DNA-binding pseudobarrel domain
CDDcd100178.03E-15354452No hitNo description
PfamPF023623.3E-13356453IPR003340B3 DNA binding domain
PROSITE profilePS5086312.337357454IPR003340B3 DNA binding domain
SMARTSM010196.1E-7362454IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MLTIGSLQKL PKAFTRKYGD GISNPVFLKS PDGTEWEIHW NKHDGEICLQ KGWKEFATFY  60
SLDHGHLLLF EYKGTSHFDV HIFDNSALEI DYPSHNGKDN ITVEYVEIFD DQKTRVKSTL  120
SSPQPCKKMK TSITTNVERS TNGVNLHQRV QTRSTSSQKA KLDEDEIKMV QLTSTSLNKA  180
TAVRSEHPSF KLVMKPPYIN GYYLDIPPQF SKQYLKKTHA VVLLRVLDGR SWPVIYSAPR  240
INGGWQKFAL ENNLNVGDVC VFELIQEIHS IAFTVSIFPG AEKPSCPISQ VKAKTEFNEN  300
AKIDHSKCRI VRPSTNWTGG SSSQRSSLLQ SHTKPKILTT RARKKASEFT SENPFFTVTL  360
TNQKRLKTPR CPYVPSEFVR KYFVKMKQNV MMIQFKKKVW PLKFAFHSCA VSGMLAGGWS  420
SFATENELQH GDVCIFELVN REDTILDLHV FRNHCKVMH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1342366RKKASEFTSENPFFTVTLTNQKRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_27838
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020231107.10.0B3 domain-containing transcription factor VRN1 isoform X1
TrEMBLA0A151SA860.0A0A151SA86_CAJCA; B3 domain-containing transcription factor VRN1
STRINGGLYMA09G20150.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-30B3 family protein