PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_27281 | ||||||||
Common Name | KK1_027639 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | ERF | ||||||||
Protein Properties | Length: 251aa MW: 26888.9 Da PI: 8.4765 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.5 | 5.1e-21 | 62 | 112 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a+++a+++++g+ C.cajan_27281 62 RYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFDTAEAAARAYDEAALRFRGN 112 7********.**********93....36*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 25.883 | 62 | 119 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.6E-15 | 62 | 111 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-33 | 62 | 120 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.02E-23 | 62 | 120 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.2E-38 | 62 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-12 | 63 | 74 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.33E-15 | 70 | 121 | No hit | No description |
PRINTS | PR00367 | 4.9E-12 | 85 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MMPRFMHVSS PPGLSSSSGS GPSLMGPVPA SGWAGQKRTR EDETGGCLTR GSEEESGERR 60 RRYRGVRQRP WGKWAAEIRD PQKAARVWLG TFDTAEAAAR AYDEAALRFR GNRAKLNFPE 120 NVAALRPPLP DSTPAASALL QGAPVQDSSD VLRDYWGYSQ LLSGSGEFHG LDPWLFDSQM 180 ATLQSSSSFL SPPAFPPSSA SFPLFSSPQF GVFRPPPHHP QGAGDAAAAS HFPPSTWSDT 240 AGYPPPPPGP G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-23 | 61 | 122 | 4 | 66 | ATERF1 |
3gcc_A | 7e-23 | 61 | 122 | 4 | 66 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 57 | 62 | ERRRRY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_27281 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 9e-80 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020232101.1 | 1e-178 | ethylene-responsive transcription factor ERF110 | ||||
Refseq | XP_020232102.1 | 1e-178 | ethylene-responsive transcription factor ERF110 | ||||
TrEMBL | A0A151S6Z8 | 1e-177 | A0A151S6Z8_CAJCA; Ethylene-responsive transcription factor ERF112 family | ||||
STRING | XP_007143561.1 | 4e-73 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4919 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 2e-16 | ethylene response factor 110 |